Factsheet for Zm00001d003009_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d015521_P001
Zm00001d017475_P002
Zm00001d017793_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT3G45210.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT3G45210.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G03230.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G03230.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G03230.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G03230.1	Zm00001d044479_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d015521_P001	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26730	Sorghum	mitochondrion	88.59	85.34
Zm00001d025872_P001	Maize	mitochondrion	75.54	77.22
TraesCS2A01G380100.1	Wheat	mitochondrion	72.28	74.72
TraesCS2B01G397000.1	Wheat	mitochondrion	71.2	73.6
Os04t0520700-01	Rice	mitochondrion	69.57	73.56
TraesCS2D01G376300.1	Wheat	mitochondrion	70.65	73.45
HORVU0Hr1G005210.2	Barley	cytosol, plastid	67.39	70.06
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	50.0	56.1
Zm00001d017287_P001	Maize	cytosol	45.11	48.82
KRH22888	Soybean	cytosol, mitochondrion, nucleus	36.41	43.51
Solyc06g075170.1.1	Tomato	nucleus	37.5	42.33
VIT_06s0004g02830.t01	Wine grape	cytosol	38.04	41.92
PGSC0003DMT400045373	Potato	cytosol	33.15	41.5
PGSC0003DMT400062500	Potato	nucleus	36.96	39.77
KRH26408	Soybean	cytosol	32.07	39.6
AT5G03230.1	Thale cress	nucleus	34.78	38.55
Bra020237.1-P	Field mustard	nucleus	34.78	38.55
VIT_08s0040g01860.t01	Wine grape	cytosol	34.24	38.41
PGSC0003DMT400020798	Potato	plastid	35.33	38.24
Solyc11g069450.1.1	Tomato	cytosol	35.87	38.15
PGSC0003DMT400055482	Potato	cytosol	33.15	38.12
Solyc09g007790.1.1	Tomato	cytosol	32.61	37.97
AT5G60680.1	Thale cress	nucleus	33.15	37.42
Zm00001d014007_P001	Maize	cytosol, plastid	35.87	36.87
AT3G45210.1	Thale cress	nucleus	29.35	36.49
CDY65979	Canola	nucleus	31.52	36.48
KRH25013	Soybean	mitochondrion	33.7	36.47
CDY10396	Canola	nucleus	34.78	36.36
CDX70321	Canola	nucleus	34.78	36.36
KRH29916	Soybean	mitochondrion	33.7	36.26
Solyc10g086110.1.1	Tomato	cytosol	30.98	36.08
Bra009543.1-P	Field mustard	nucleus	34.24	35.8
Bra002459.1-P	Field mustard	nucleus	30.98	35.62
KRG95986	Soybean	nucleus	29.35	35.53
CDY62461	Canola	nucleus	30.43	35.44
KRH19865	Soybean	mitochondrion	34.24	35.0
KRH67690	Soybean	cytosol	31.52	34.94
CDX77180	Canola	nucleus	30.98	34.55
KRH32477	Soybean	cytosol	34.78	34.04
AT2G28400.1	Thale cress	mitochondrion	29.89	33.95
Bra005738.1-P	Field mustard	cytosol	32.61	33.71
CDX80857	Canola	cytosol	32.61	33.52
CDY11244	Canola	cytosol	32.07	33.15
Zm00001d025070_P001	Maize	cytosol, plastid	18.48	30.91
Zm00001d051400_P001	Maize	mitochondrion	19.02	28.46
Zm00001d021627_P001	Maize	mitochondrion	28.8	28.19
Zm00001d048508_P001	Maize	mitochondrion	26.09	28.07
Zm00001d023440_P001	Maize	cytosol, peroxisome, plastid	25.54	27.81
Zm00001d006489_P001	Maize	mitochondrion	28.8	27.6
Zm00001d025967_P001	Maize	nucleus	31.52	27.49
Zm00001d002798_P001	Maize	mitochondrion	30.98	27.27
Zm00001d042760_P001	Maize	nucleus	27.72	24.17
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	28.8	21.37
Bra035703.1-P	Field mustard	cytosol	28.26	21.14
Zm00001d032976_P001	Maize	mitochondrion, nucleus	26.63	19.37

Protein Annotations

EnsemblPlants:Zm00001d003009_P001	EnsemblPlants:Zm00001d003009_T001	EnsemblPlantsGene:Zm00001d003009	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF40
PFAM:PF04520	ProteinID:ONM15872.1	SEG:seg	UniParc:UPI0002217A5D	UniProt:A0A1D6E5Y0	MapMan:35.2

Description

senescence regulator

Coordinates

chr2:+:29360438..29360992

Molecular Weight (calculated)

19233.0 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.718

Length

184 amino acids

Sequence
(BLAST)

001: MAGSARSAAA KHAYRMFVAP SRGGAAARGP GAGAAEEFDE SDVWGSFGAD SQYSSPGAEL GAGWARPIPG SGARRKKPVD GGGGGGAAGS LPMNIPDWQK
101: ILGVEYRDHH RAGEWEPGAD DDDDDDGSSY GRARGGAEMV PPHELAWRSR AASLSVHEGI GRTLKGRDLS RVRDAVWKKT GFED

Best Arabidopsis Sequence Match ( AT5G60680.1 )
(BLAST)

001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.