Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001405 | |
| PGSC0003DMT400063189 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45210.1 | PGSC0003DMT400001405 | AT3G27960.1 | 21798944 |
| AT3G45210.1 | PGSC0003DMT400063189 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g069450.1.1 | Tomato | cytosol | 98.24 | 96.53 |
| PGSC0003DMT400062500 | Potato | nucleus | 70.59 | 70.18 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 62.94 | 64.07 |
| CDY65979 | Canola | nucleus | 55.88 | 59.75 |
| AT5G60680.1 | Thale cress | nucleus | 57.06 | 59.51 |
| Bra002459.1-P | Field mustard | nucleus | 55.88 | 59.38 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 52.35 | 57.79 |
| Bra020237.1-P | Field mustard | nucleus | 54.12 | 55.42 |
| AT3G45210.1 | Thale cress | nucleus | 48.24 | 55.41 |
| KRH26408 | Soybean | cytosol | 48.24 | 55.03 |
| PGSC0003DMT400045373 | Potato | cytosol | 42.94 | 49.66 |
| GSMUA_Achr11P... | Banana | mitochondrion | 41.76 | 49.65 |
| PGSC0003DMT400055482 | Potato | cytosol | 44.71 | 47.5 |
| KRH29916 | Soybean | mitochondrion | 47.65 | 47.37 |
| KRH25013 | Soybean | mitochondrion | 47.06 | 47.06 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 40.0 | 41.98 |
| CDY62461 | Canola | nucleus | 38.24 | 41.14 |
| AT2G28400.1 | Thale cress | mitochondrion | 38.82 | 40.74 |
| CDX77180 | Canola | nucleus | 39.41 | 40.61 |
| Os04t0520700-01 | Rice | mitochondrion | 40.59 | 39.66 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 38.24 | 39.63 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 38.82 | 37.08 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 38.24 | 36.72 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 37.65 | 35.96 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 37.65 | 35.75 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 37.65 | 35.75 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 37.65 | 35.36 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 37.65 | 35.36 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 37.65 | 35.36 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 38.24 | 35.33 |
| Os02t0629000-01 | Rice | mitochondrion | 35.29 | 35.29 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 36.47 | 35.03 |
| Zm00001d025872_P001 | Maize | mitochondrion | 37.06 | 35.0 |
| KXG26730 | Sorghum | mitochondrion | 38.82 | 34.55 |
| EER91475 | Sorghum | mitochondrion | 37.65 | 33.68 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 33.53 | 32.95 |
| PGSC0003DMT400042495 | Potato | nucleus | 29.41 | 32.68 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 33.53 | 32.39 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 33.53 | 32.02 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 32.35 | 31.79 |
| Zm00001d017287_P001 | Maize | cytosol | 31.18 | 31.18 |
| PGSC0003DMT400057474 | Potato | nucleus | 35.29 | 30.93 |
| PGSC0003DMT400032972 | Potato | mitochondrion | 35.29 | 30.15 |
| PGSC0003DMT400042431 | Potato | mitochondrion, nucleus | 35.88 | 29.47 |
| PGSC0003DMT400090902 | Potato | cytosol, plastid | 35.29 | 28.99 |
| PGSC0003DMT400072600 | Potato | nucleus | 35.88 | 25.31 |
| PGSC0003DMT400023089 | Potato | cytosol | 35.29 | 25.0 |
| Bra035703.1-P | Field mustard | cytosol | 35.29 | 24.39 |
| PGSC0003DMT400015061 | Potato | cytosol, mitochondrion, nucleus, plastid | 31.76 | 24.32 |
| Os10t0481000-00 | Rice | mitochondrion | 27.06 | 15.38 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400020798 | EnsemblPlantsGene:PGSC0003DMG400008052 | EntrezGene:102589274 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 |
| PFAM:PF04520 | PGSC:PGSC0003DMG400008052 | RefSeq:XP_006340195.1 | SEG:seg | UniParc:UPI000294C2AB | UniProt:M1AE36 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008052]
Coordinates
chr11:-:41665214..41666046
Molecular Weight (calculated)
19237.0 Da
IEP (calculated)
8.950
GRAVY (calculated)
-0.926
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASKSYFAR SNYRFLSSDR NVSVTSDTMF ELDESDVWNS PATARSSSPE FRKTSTRISR KQSIARSDRN STGVTVKAAA AASSMPVNVP DWSKILKDEY
101: RENRRRDSDD DGEDDDDAEN RIPPHEFLAR QFARTRIASF SVHEGVGRTL KGRDLSRVRN AIFEKTGFED
101: RENRRRDSDD DGEDDDDAEN RIPPHEFLAR QFARTRIASF SVHEGVGRTL KGRDLSRVRN AIFEKTGFED
001: MATATRKSYY QRPSHRFLPT DRTYNVTGDS EFEFDESDLY SNRSDSPEFR RKLITSNRKS SPATVTTTTV ASSLPMNVQN WSKILGKENR KSIENDDDGG
101: EGKLPPHEYL AKTRMASFSV HEGIGRTLKG RDMSRVRNAI LEKTGFLD
101: EGKLPPHEYL AKTRMASFSV HEGIGRTLKG RDMSRVRNAI LEKTGFLD
Arabidopsis Description
AT3g45210/T14D3_150 [Source:UniProtKB/TrEMBL;Acc:Q9M1T8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.