Factsheet for Zm00001d017287_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d015521_P001
Zm00001d017475_P002
Zm00001d017793_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT3G45210.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT3G45210.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G03230.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G03230.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G03230.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G03230.1	Zm00001d044479_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d015521_P001	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0629000-01	Rice	mitochondrion	60.0	60.0
TraesCS6D01G212800.1	Wheat	cytosol	59.41	58.38
TraesCS6B01G258900.1	Wheat	nucleus	58.24	57.23
TraesCS6A01G222200.1	Wheat	cytosol	58.82	56.82
HORVU0Hr1G016350.1	Barley	cytosol, mitochondrion, nucleus, plastid	59.41	56.74
Zm00001d003009_P001	Maize	mitochondrion, nucleus	48.82	45.11
Zm00001d025872_P001	Maize	mitochondrion	47.65	45.0
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	39.41	40.85
KRH22888	Soybean	cytosol, mitochondrion, nucleus	34.71	38.31
Solyc06g075170.1.1	Tomato	nucleus	34.12	35.58
PGSC0003DMT400045373	Potato	cytosol	30.59	35.37
VIT_06s0004g02830.t01	Wine grape	cytosol	34.71	35.33
Solyc09g007790.1.1	Tomato	cytosol	31.18	33.54
KRH25013	Soybean	mitochondrion	33.53	33.53
PGSC0003DMT400062500	Potato	nucleus	33.53	33.33
KRH26408	Soybean	cytosol	28.24	32.21
AT5G03230.1	Thale cress	nucleus	31.18	31.93
PGSC0003DMT400055482	Potato	cytosol	30.0	31.88
Solyc10g086110.1.1	Tomato	cytosol	29.41	31.65
KRH29916	Soybean	mitochondrion	31.76	31.58
PGSC0003DMT400020798	Potato	plastid	31.18	31.18
VIT_08s0040g01860.t01	Wine grape	cytosol	30.0	31.1
Solyc11g069450.1.1	Tomato	cytosol	31.18	30.64
Bra002459.1-P	Field mustard	nucleus	28.82	30.62
CDY62461	Canola	nucleus	28.24	30.38
CDY10396	Canola	nucleus	31.18	30.11
CDX70321	Canola	nucleus	31.18	30.11
AT5G60680.1	Thale cress	nucleus	28.82	30.06
Zm00001d025070_P001	Maize	cytosol, plastid	19.41	30.0
CDX77180	Canola	nucleus	28.82	29.7
AT2G28400.1	Thale cress	mitochondrion	28.24	29.63
Zm00001d014007_P001	Maize	cytosol, plastid	31.18	29.61
KRG95986	Soybean	nucleus	26.47	29.61
CDY65979	Canola	nucleus	27.65	29.56
Bra009543.1-P	Field mustard	nucleus	30.59	29.55
Bra020237.1-P	Field mustard	nucleus	28.82	29.52
KRH67690	Soybean	cytosol	28.82	29.52
CDX80857	Canola	cytosol	30.0	28.49
KRH19865	Soybean	mitochondrion	30.0	28.33
Bra005738.1-P	Field mustard	cytosol	29.41	28.09
CDY11244	Canola	cytosol	29.41	28.09
Zm00001d051400_P001	Maize	mitochondrion	20.0	27.64
AT3G45210.1	Thale cress	nucleus	23.53	27.03
Zm00001d023440_P001	Maize	cytosol, peroxisome, plastid	26.47	26.63
Zm00001d021627_P001	Maize	mitochondrion	29.41	26.6
KRH32477	Soybean	cytosol	29.41	26.6
Zm00001d048508_P001	Maize	mitochondrion	26.47	26.32
Zm00001d006489_P001	Maize	mitochondrion	29.41	26.04
Zm00001d002798_P001	Maize	mitochondrion	30.0	24.4
Zm00001d025967_P001	Maize	nucleus	28.24	22.75
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	28.24	19.35
Zm00001d042760_P001	Maize	nucleus	22.94	18.48
Bra035703.1-P	Field mustard	cytosol	26.47	18.29
Zm00001d032976_P001	Maize	mitochondrion, nucleus	22.94	15.41

Protein Annotations

EnsemblPlants:Zm00001d017287_P001	EnsemblPlants:Zm00001d017287_T001	EnsemblPlantsGene:Zm00001d017287	InterPro:Senescence_reg_S40	ncoils:Coil	PANTHER:PTHR33083
PANTHER:PTHR33083:SF17	PFAM:PF04520	ProteinID:AQK72786.1	SEG:seg	UniParc:UPI000220D781	UniProt:A0A1D6HDN0
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:191750113..191750625

Molecular Weight (calculated)

17883.8 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.307

Length

170 amino acids

Sequence
(BLAST)

001: MARTTRSAAT ERAYLHFAPA PHGGGVVVVP TSPLAGTGED FDESDIWGAF APSAAAAPAA EAPPPRARPF VLAAAGKATT KPAAPAHGSL PVKIPDWSKI
101: LGDEYRPAGY HHGWDWEVDD ADDDGSVDAL VPPHELACRR RAASLSVNGV VGRTLKVRDA VWKRTTGFQD

Best Arabidopsis Sequence Match ( AT2G28400.1 )
(BLAST)

001: MATSKCYYPR PSHRFFTTDQ HVTATSDFEL DEWDLFNTGS DSSSSFSFSD LTITSGRTGT NRQIHGGSDS GKAASSLPVN VPDWSKILGD ESRRQRKISN
101: EEEVDGDEIL CGEGTRRVPP HELLANRRMA SFSVHEGAGR TLKGRDLSRV RNTIFKIRGI ED

Arabidopsis Description

Uncharacterized protein At2g28400 [Source:UniProtKB/TrEMBL;Acc:Q9SKN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.