Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001405 | |
| PGSC0003DMT400063189 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45210.1 | PGSC0003DMT400001405 | AT3G27960.1 | 21798944 |
| AT3G45210.1 | PGSC0003DMT400063189 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g075170.1.1 | Tomato | nucleus | 92.4 | 96.93 |
| PGSC0003DMT400020798 | Potato | plastid | 70.18 | 70.59 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 62.57 | 64.07 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 53.22 | 59.09 |
| CDY65979 | Canola | nucleus | 54.39 | 58.49 |
| KRH26408 | Soybean | cytosol | 50.88 | 58.39 |
| Bra002459.1-P | Field mustard | nucleus | 54.39 | 58.12 |
| AT5G60680.1 | Thale cress | nucleus | 53.8 | 56.44 |
| Bra020237.1-P | Field mustard | nucleus | 53.8 | 55.42 |
| AT3G45210.1 | Thale cress | nucleus | 47.37 | 54.73 |
| PGSC0003DMT400045373 | Potato | cytosol | 43.86 | 51.02 |
| PGSC0003DMT400055482 | Potato | cytosol | 45.03 | 48.12 |
| GSMUA_Achr11P... | Banana | mitochondrion | 39.77 | 47.55 |
| KRH25013 | Soybean | mitochondrion | 46.78 | 47.06 |
| KRH29916 | Soybean | mitochondrion | 46.78 | 46.78 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 43.86 | 46.3 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 39.77 | 41.46 |
| Os04t0520700-01 | Rice | mitochondrion | 41.52 | 40.8 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 40.94 | 39.55 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 40.94 | 39.33 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 40.35 | 38.98 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 40.35 | 38.76 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 40.94 | 38.67 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 40.35 | 38.12 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 40.35 | 38.12 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 39.77 | 37.99 |
| CDY62461 | Canola | nucleus | 35.09 | 37.97 |
| CDX77180 | Canola | nucleus | 36.26 | 37.58 |
| AT2G28400.1 | Thale cress | mitochondrion | 35.09 | 37.04 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 39.77 | 36.96 |
| Os02t0629000-01 | Rice | mitochondrion | 36.26 | 36.47 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 38.01 | 36.31 |
| KXG26730 | Sorghum | mitochondrion | 40.35 | 36.13 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 36.26 | 35.84 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 36.26 | 35.84 |
| EER91475 | Sorghum | mitochondrion | 39.18 | 35.26 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 36.26 | 34.83 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 35.67 | 34.66 |
| Zm00001d025872_P001 | Maize | mitochondrion | 35.67 | 33.89 |
| Zm00001d017287_P001 | Maize | cytosol | 33.33 | 33.53 |
| PGSC0003DMT400042495 | Potato | nucleus | 28.66 | 32.03 |
| PGSC0003DMT400057474 | Potato | nucleus | 35.09 | 30.93 |
| PGSC0003DMT400032972 | Potato | mitochondrion | 33.33 | 28.64 |
| PGSC0003DMT400042431 | Potato | mitochondrion, nucleus | 33.92 | 28.02 |
| PGSC0003DMT400090902 | Potato | cytosol, plastid | 33.33 | 27.54 |
| PGSC0003DMT400072600 | Potato | nucleus | 35.67 | 25.31 |
| Bra035703.1-P | Field mustard | cytosol | 33.33 | 23.17 |
| PGSC0003DMT400023089 | Potato | cytosol | 32.16 | 22.92 |
| PGSC0003DMT400015061 | Potato | cytosol, mitochondrion, nucleus, plastid | 29.24 | 22.52 |
| Os10t0481000-00 | Rice | mitochondrion | 28.07 | 16.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400062500 | EnsemblPlantsGene:PGSC0003DMG400024323 | EntrezGene:102600128 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 |
| PFAM:PF04520 | PGSC:PGSC0003DMG400024323 | RefSeq:XP_006365734.1 | SEG:seg | UniParc:UPI00029524ED | UniProt:M1C961 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024323]
Coordinates
chr6:-:55827546..55828389
Molecular Weight (calculated)
19437.3 Da
IEP (calculated)
6.283
GRAVY (calculated)
-0.895
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASRSYFAT ANYHFLSTEP DLAMTPDSVF EFDESDVWNS STVSQSPEFR KKSPSSRISR KQRETKSYRK CSGATATATA TTTAASLPVN VPDWSKILKD
101: EYREYGRRDS DDDLDDDDLD NRIPPHEFLA KQLERTRIAS FSVHEGVGRT LKGRDLSRVR NAIWEKTGFQ D
101: EYREYGRRDS DDDLDDDDLD NRIPPHEFLA KQLERTRIAS FSVHEGVGRT LKGRDLSRVR NAIWEKTGFQ D
001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.