Factsheet for PGSC0003DMT400042431

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080510.1.1	Tomato	mitochondrion	95.17	95.63
VIT_10s0116g01810.t01	Wine grape	mitochondrion, nucleus	61.35	65.8
PGSC0003DMT400032972	Potato	mitochondrion	62.8	65.33
VIT_10s0116g01820.t01	Wine grape	mitochondrion, nucleus	65.22	63.38
KRH20860	Soybean	mitochondrion	57.0	60.51
KRH11426	Soybean	mitochondrion	55.56	59.59
AT1G11700.1	Thale cress	nucleus	51.21	52.74
KRH02073	Soybean	nucleus	53.62	52.11
CDY34631	Canola	nucleus	48.79	50.25
CDX97979	Canola	mitochondrion	48.79	49.51
Bra019837.1-P	Field mustard	mitochondrion	48.79	49.27
GSMUA_Achr7P00240_001	Banana	extracellular	20.29	48.84
CDY49797	Canola	mitochondrion	48.31	48.78
KRH51082	Soybean	nucleus	53.62	48.05
AT1G61930.1	Thale cress	cytosol	46.86	47.78
Bra027071.1-P	Field mustard	cytosol	45.41	47.47
CDY12918	Canola	cytosol	45.41	47.47
CDY19509	Canola	cytosol	44.93	46.97
CDX79110	Canola	nucleus	39.13	46.82
AT4G21930.1	Thale cress	cytosol	41.06	46.45
Bra013574.1-P	Field mustard	cytosol	38.65	46.24
CDX82885	Canola	nucleus	38.65	46.24
GSMUA_AchrUn_...	Banana	nucleus	35.75	40.66
EER97815	Sorghum	mitochondrion	32.37	39.88
GSMUA_Achr4P33500_001	Banana	nucleus	34.78	39.34
HORVU2Hr1G064730.1	Barley	cytosol	33.33	39.2
TraesCS2B01G286300.1	Wheat	mitochondrion, nucleus	33.82	38.89
TraesCS2D01G266500.1	Wheat	mitochondrion, nucleus	33.33	38.76
TraesCS2A01G256200.1	Wheat	mitochondrion, nucleus	33.82	38.46
PGSC0003DMT400045373	Potato	cytosol	27.05	38.1
TraesCS2B01G247900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.43	37.28
TraesCS2D01G228500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.47	36.09
TraesCS2A01G222500.1	Wheat	cytosol	29.47	36.09
PGSC0003DMT400020798	Potato	plastid	29.47	35.88
PGSC0003DMT400055482	Potato	cytosol	27.05	35.0
Zm00001d006489_P001	Maize	mitochondrion	31.88	34.38
PGSC0003DMT400062500	Potato	nucleus	28.02	33.92
Zm00001d021627_P001	Maize	mitochondrion	29.95	32.98
EER99449	Sorghum	mitochondrion	30.43	32.47
Os07t0516300-01	Rice	mitochondrion	28.99	30.61
PGSC0003DMT400090902	Potato	cytosol, plastid	29.47	29.47
PGSC0003DMT400057474	Potato	nucleus	27.05	28.87
PGSC0003DMT400042495	Potato	nucleus	21.26	28.76
GSMUA_Achr6P00350_001	Banana	cytosol, nucleus, plastid	23.19	28.07
PGSC0003DMT400015061	Potato	cytosol, mitochondrion, nucleus, plastid	27.54	25.68
PGSC0003DMT400072600	Potato	nucleus	28.02	24.07
PGSC0003DMT400023089	Potato	cytosol	27.54	23.75
HORVU2Hr1G046550.2	Barley	plastid	23.19	23.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400042431	EnsemblPlantsGene:PGSC0003DMG400016455	EntrezGene:102595538	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF11
PFAM:PF04520	PGSC:PGSC0003DMG400016455	RefSeq:XP_006348114.1	SEG:seg	UniParc:UPI000295F043	UniProt:M1BD10
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016455]

Coordinates

chr2:-:36301322..36302571

Molecular Weight (calculated)

22923.1 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.932

Length

207 amino acids

Sequence
(BLAST)

001: MAKGRKLATS RSEMLLGNYP SYRNGTATLN GSSELGEDDI WSTVDDMDDH DSRGEWSPRA ADESNNGYVN RKLPVQQSDH HHSRRGRQVG GLSLAFDDSG
101: KTASPRILHQ FRGQDAPSTR VAHMATSAPV NVPDWSKIYR VNSVESLHDS DDGVDDHDSE MVPPHEYIAR SRNSNARSVF EGVGRTLKGR DLSRVRDAVW
201: SQTGFDG

Best Arabidopsis Sequence Match ( AT1G11700.1 )
(BLAST)

001: MARGRKLTMS QSERYLGSSY SYGDSNGNSA TDESELTEED IWSHAVDHSP EMLESHGAWN TRDAVVRNGR VGGGLSLAFE DASSSPRIVH QIRGGGEGGG
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G

Arabidopsis Description

At1g11700 [Source:UniProtKB/TrEMBL;Acc:Q9SAA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.