Factsheet for VIT_10s0116g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g01820.t01	Wine grape	mitochondrion, nucleus	98.96	89.67
KRH20860	Soybean	mitochondrion	63.21	62.56
KRH11426	Soybean	mitochondrion	62.18	62.18
Solyc02g080510.1.1	Tomato	mitochondrion	65.8	61.65
PGSC0003DMT400042431	Potato	mitochondrion, nucleus	65.8	61.35
PGSC0003DMT400032972	Potato	mitochondrion	63.21	61.31
VIT_06s0080g00750.t01	Wine grape	cytosol	15.54	60.0
Solyc02g032800.1.1	Tomato	nucleus	63.21	56.74
KRH02073	Soybean	nucleus	60.62	54.93
GSMUA_Achr7P00240_001	Banana	extracellular	23.32	52.33
KRH51082	Soybean	nucleus	62.18	51.95
CDX79110	Canola	nucleus	43.52	48.55
AT4G21930.1	Thale cress	cytosol	45.6	48.09
Bra013574.1-P	Field mustard	cytosol	43.01	47.98
CDX82885	Canola	nucleus	43.01	47.98
GSMUA_AchrUn_...	Banana	nucleus	42.49	45.05
GSMUA_Achr4P33500_001	Banana	nucleus	41.97	44.26
EER97815	Sorghum	mitochondrion	37.82	43.45
TraesCS2D01G266500.1	Wheat	mitochondrion, nucleus	39.9	43.26
TraesCS2A01G256200.1	Wheat	mitochondrion, nucleus	40.41	42.86
TraesCS2B01G286300.1	Wheat	mitochondrion, nucleus	39.9	42.78
HORVU2Hr1G064730.1	Barley	cytosol	38.86	42.61
TraesCS2B01G247900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	33.68	38.46
VIT_00s1488g00010.t01	Wine grape	cytosol	19.69	38.38
TraesCS2A01G222500.1	Wheat	cytosol	32.64	37.28
TraesCS2D01G228500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.64	37.28
VIT_06s0004g02830.t01	Wine grape	cytosol	31.61	36.53
Zm00001d006489_P001	Maize	mitochondrion	35.75	35.94
Zm00001d021627_P001	Maize	mitochondrion	33.68	34.57
EER99449	Sorghum	mitochondrion	34.72	34.54
VIT_08s0040g01860.t01	Wine grape	cytosol	29.02	34.15
Os07t0516300-01	Rice	mitochondrion	33.16	32.65
GSMUA_Achr6P00350_001	Banana	cytosol, nucleus, plastid	28.5	32.16
VIT_10s0116g01720.t01	Wine grape	cytosol, mitochondrion, nucleus	30.05	30.53
VIT_16s0098g01240.t01	Wine grape	nucleus	31.09	29.13
VIT_08s0007g02950.t01	Wine grape	nucleus	29.02	25.69
HORVU2Hr1G046550.2	Barley	plastid	27.46	25.6
VIT_19s0090g00510.t01	Wine grape	plastid	27.46	22.84

Protein Annotations

ArrayExpress:VIT_10s0116g01810	EMBL:FN595248	EnsemblPlants:VIT_10s0116g01810.t01	EnsemblPlantsGene:VIT_10s0116g01810	InterPro:Senescence_reg_S40	PANTHER:PTHR33083
PANTHER:PTHR33083:SF11	PFAM:PF04520	ProteinID:CCB48220	ProteinID:CCB48220.1	SEG:seg	UniParc:UPI0002109014
UniProt:F6H7M5	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr10:-:1080338..1081478

Molecular Weight (calculated)

21595.1 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.876

Length

193 amino acids

Sequence
(BLAST)

001: MAKGRKLTTS RSERLLGSFA YGHGQGAGAD SSELGEEDVW SMVDDMVERD DHPAMRNHHH RRRIPRDDRH QVGGLSLAFD DSGKTTSSRI VHQYRPQDGV
101: TPSPRGHHMA TSAPVNVPDW HKILRVDSVE SLHDSDDDRE LEMVPPHEYL AREYAASRKM AATSVLEGVG RTLKGRDMSR VRDAVWSQTG FDG

Best Arabidopsis Sequence Match ( AT1G11700.1 )
(BLAST)

001: MARGRKLTMS QSERYLGSSY SYGDSNGNSA TDESELTEED IWSHAVDHSP EMLESHGAWN TRDAVVRNGR VGGGLSLAFE DASSSPRIVH QIRGGGEGGG
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G

Arabidopsis Description

At1g11700 [Source:UniProtKB/TrEMBL;Acc:Q9SAA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.