Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032972 | Potato | mitochondrion | 85.58 | 92.46 |
| Solyc02g080510.1.1 | Tomato | mitochondrion | 62.79 | 65.53 |
| VIT_10s0116g01810.t01 | Wine grape | mitochondrion, nucleus | 56.74 | 63.21 |
| VIT_10s0116g01820.t01 | Wine grape | mitochondrion, nucleus | 58.14 | 58.69 |
| KRH11426 | Soybean | mitochondrion | 49.77 | 55.44 |
| KRH20860 | Soybean | mitochondrion | 49.3 | 54.36 |
| AT1G11700.1 | Thale cress | nucleus | 48.84 | 52.24 |
| CDX97979 | Canola | mitochondrion | 47.44 | 50.0 |
| Bra019837.1-P | Field mustard | mitochondrion | 47.44 | 49.76 |
| CDY34631 | Canola | nucleus | 46.51 | 49.75 |
| CDY49797 | Canola | mitochondrion | 46.98 | 49.27 |
| AT1G61930.1 | Thale cress | cytosol | 46.51 | 49.26 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 19.53 | 48.84 |
| Bra027071.1-P | Field mustard | cytosol | 44.19 | 47.98 |
| CDY12918 | Canola | cytosol | 44.19 | 47.98 |
| KRH02073 | Soybean | nucleus | 46.98 | 47.42 |
| Solyc10g083260.1.1 | Tomato | nucleus | 16.28 | 47.3 |
| CDY19509 | Canola | cytosol | 43.26 | 46.97 |
| AT4G21930.1 | Thale cress | cytosol | 39.53 | 46.45 |
| KRH51082 | Soybean | nucleus | 49.77 | 46.32 |
| Bra013574.1-P | Field mustard | cytosol | 37.21 | 46.24 |
| CDX79110 | Canola | nucleus | 37.21 | 46.24 |
| CDX82885 | Canola | nucleus | 36.74 | 45.66 |
| HORVU2Hr1G064730.1 | Barley | cytosol | 33.02 | 40.34 |
| TraesCS2D01G266500.1 | Wheat | mitochondrion, nucleus | 32.56 | 39.33 |
| EER97815 | Sorghum | mitochondrion | 30.7 | 39.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.02 | 39.01 |
| TraesCS2A01G256200.1 | Wheat | mitochondrion, nucleus | 33.02 | 39.01 |
| TraesCS2B01G286300.1 | Wheat | mitochondrion, nucleus | 32.09 | 38.33 |
| GSMUA_Achr4P33500_001 | Banana | nucleus | 32.56 | 38.25 |
| Solyc06g075170.1.1 | Tomato | nucleus | 28.37 | 37.42 |
| TraesCS2B01G247900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.3 | 37.28 |
| TraesCS2A01G222500.1 | Wheat | cytosol | 28.37 | 36.09 |
| TraesCS2D01G228500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 28.37 | 36.09 |
| Solyc11g069450.1.1 | Tomato | cytosol | 28.84 | 35.84 |
| Solyc10g086110.1.1 | Tomato | cytosol | 26.05 | 35.44 |
| Solyc09g007790.1.1 | Tomato | cytosol | 25.58 | 34.81 |
| Zm00001d006489_P001 | Maize | mitochondrion | 30.23 | 33.85 |
| Zm00001d021627_P001 | Maize | mitochondrion | 29.3 | 33.51 |
| EER99449 | Sorghum | mitochondrion | 29.3 | 32.47 |
| Os07t0516300-01 | Rice | mitochondrion | 28.37 | 31.12 |
| Solyc03g082610.1.1 | Tomato | plastid | 28.84 | 29.95 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 23.26 | 29.24 |
| Solyc02g080580.1.1 | Tomato | nucleus | 20.93 | 29.03 |
| Solyc07g064650.1.1 | Tomato | nucleus | 23.72 | 28.65 |
| Solyc09g010140.1.1 | Tomato | cytosol | 27.44 | 24.58 |
| HORVU2Hr1G046550.2 | Barley | plastid | 22.79 | 23.67 |
| Solyc06g074260.2.1 | Tomato | cytosol | 26.05 | 14.51 |
Protein Annotations
| EnsemblPlants:Solyc02g032800.1.1 | EnsemblPlantsGene:Solyc02g032800.1 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF11 | PFAM:PF04520 |
| SEG:seg | UniParc:UPI0002767568 | UniProt:K4B5M4 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2:-:29257872..29258519
Molecular Weight (calculated)
23510.7 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.819
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKGRKLTIS MSERYLGSYS YNNGNQTVNE TWEFGEDDVW STVDEMVNAG GGDDDHLMNG ACNSRATAES DVRSFRSSRR CQAGGGSSGG LSLAFDDDAG
101: KATSSSRIIH QFRGQDSLAA QSPRGRHMAS SAPVNVPDWS KIYRVDSVES FHDSDDGADD HELDMIPPHE YLARGYGRSR KSTTDSMFEG VGRTLKGRDM
201: SRVRDAVWSQ TGFDG
101: KATSSSRIIH QFRGQDSLAA QSPRGRHMAS SAPVNVPDWS KIYRVDSVES FHDSDDGADD HELDMIPPHE YLARGYGRSR KSTTDSMFEG VGRTLKGRDM
201: SRVRDAVWSQ TGFDG
001: MARGRKLTMS QSERYLGSSY SYGDSNGNSA TDESELTEED IWSHAVDHSP EMLESHGAWN TRDAVVRNGR VGGGLSLAFE DASSSPRIVH QIRGGGEGGG
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G
Arabidopsis Description
At1g11700 [Source:UniProtKB/TrEMBL;Acc:Q9SAA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.