Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97979 | Canola | mitochondrion | 87.56 | 86.27 |
| Bra019837.1-P | Field mustard | mitochondrion | 87.56 | 85.85 |
| CDY49797 | Canola | mitochondrion | 86.07 | 84.39 |
| CDY34631 | Canola | nucleus | 80.1 | 80.1 |
| AT1G61930.1 | Thale cress | cytosol | 71.64 | 70.94 |
| PGSC0003DMT400042431 | Potato | mitochondrion, nucleus | 52.74 | 51.21 |
| Solyc02g080510.1.1 | Tomato | mitochondrion | 51.74 | 50.49 |
| PGSC0003DMT400032972 | Potato | mitochondrion | 49.75 | 50.25 |
| Solyc02g032800.1.1 | Tomato | nucleus | 52.24 | 48.84 |
| AT4G21930.1 | Thale cress | cytosol | 42.79 | 46.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.81 | 42.86 |
| GSMUA_Achr4P33500_001 | Banana | nucleus | 37.81 | 41.53 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 17.41 | 40.7 |
| TraesCS2B01G286300.1 | Wheat | mitochondrion, nucleus | 35.32 | 39.44 |
| TraesCS2D01G266500.1 | Wheat | mitochondrion, nucleus | 34.83 | 39.33 |
| HORVU2Hr1G064730.1 | Barley | cytosol | 33.83 | 38.64 |
| TraesCS2A01G256200.1 | Wheat | mitochondrion, nucleus | 34.83 | 38.46 |
| EER97815 | Sorghum | mitochondrion | 31.34 | 37.5 |
| TraesCS2B01G247900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 30.35 | 36.09 |
| TraesCS2D01G228500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.35 | 34.91 |
| TraesCS2A01G222500.1 | Wheat | cytosol | 29.35 | 34.91 |
| AT5G60680.1 | Thale cress | nucleus | 27.86 | 34.36 |
| AT3G45210.1 | Thale cress | nucleus | 24.38 | 33.11 |
| AT5G03230.1 | Thale cress | nucleus | 25.87 | 31.33 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 25.37 | 30.36 |
| Os07t0516300-01 | Rice | mitochondrion | 29.35 | 30.1 |
| AT4G26950.1 | Thale cress | nucleus | 21.39 | 29.86 |
| Zm00001d006489_P001 | Maize | mitochondrion | 27.86 | 29.17 |
| AT2G28400.1 | Thale cress | mitochondrion | 23.38 | 29.01 |
| Zm00001d021627_P001 | Maize | mitochondrion | 26.87 | 28.72 |
| AT4G21970.1 | Thale cress | nucleus | 22.39 | 28.66 |
| EER99449 | Sorghum | mitochondrion | 27.36 | 28.35 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 21.39 | 25.15 |
| AT3G15040.1 | Thale cress | nucleus | 27.86 | 23.05 |
| HORVU2Hr1G046550.2 | Barley | plastid | 22.89 | 22.22 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837714 | UniProt:A0A178W9R3 | ProteinID:AAD30253.1 | ProteinID:AEE28772.1 | EMBL:AF348581 |
| EMBL:AK227681 | ArrayExpress:AT1G11700 | EnsemblPlantsGene:AT1G11700 | RefSeq:AT1G11700 | TAIR:AT1G11700 | RefSeq:AT1G11700-TAIR-G |
| EnsemblPlants:AT1G11700.1 | TAIR:AT1G11700.1 | EMBL:BT003115 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | RefSeq:NP_172635.1 |
| ProteinID:OAP15157.1 | PFAM:PF04520 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33083 |
| PANTHER:PTHR33083:SF11 | UniProt:Q9SAA7 | InterPro:Senescence_reg_S40 | UniParc:UPI000000BEF1 | SEG:seg | : |
Description
At1g11700 [Source:UniProtKB/TrEMBL;Acc:Q9SAA7]
Coordinates
chr1:+:3945584..3946757
Molecular Weight (calculated)
21780.0 Da
IEP (calculated)
5.646
GRAVY (calculated)
-0.852
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGRKLTMS QSERYLGSSY SYGDSNGNSA TDESELTEED IWSHAVDHSP EMLESHGAWN TRDAVVRNGR VGGGLSLAFE DASSSPRIVH QIRGGGEGGG
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.