Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29096 | Canola | nucleus | 70.24 | 78.67 |
| Bra029510.1-P | Field mustard | nucleus | 69.64 | 78.52 |
| CDX94568 | Canola | nucleus | 69.64 | 78.0 |
| CDY16655 | Canola | nucleus | 76.19 | 76.65 |
| AT4G21970.1 | Thale cress | nucleus | 57.14 | 61.15 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 34.52 | 58.59 |
| KRH20851 | Soybean | nucleus | 47.62 | 49.08 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 39.29 | 48.89 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 52.98 | 46.84 |
| KRH51093 | Soybean | nucleus | 47.62 | 42.33 |
| KRH02067 | Soybean | nucleus | 45.24 | 41.08 |
| AT4G26950.1 | Thale cress | nucleus | 34.52 | 40.28 |
| PGSC0003DMT400042495 | Potato | nucleus | 36.31 | 39.87 |
| Solyc02g080580.1.1 | Tomato | nucleus | 35.71 | 38.71 |
| AT3G45210.1 | Thale cress | nucleus | 29.76 | 33.78 |
| AT2G28400.1 | Thale cress | mitochondrion | 29.76 | 30.86 |
| AT5G60680.1 | Thale cress | nucleus | 29.76 | 30.67 |
| AT5G03230.1 | Thale cress | nucleus | 28.57 | 28.92 |
| AT4G21930.1 | Thale cress | cytosol | 30.36 | 27.87 |
| AT1G11700.1 | Thale cress | nucleus | 30.36 | 25.37 |
| AT1G61930.1 | Thale cress | cytosol | 29.76 | 24.63 |
| AT3G15040.1 | Thale cress | nucleus | 31.55 | 21.81 |
Protein Annotations
| MapMan:35.2 | EntrezGene:825795 | ProteinID:AEE82406.1 | ArrayExpress:AT4G04630 | EnsemblPlantsGene:AT4G04630 | RefSeq:AT4G04630 |
| TAIR:AT4G04630 | RefSeq:AT4G04630-TAIR-G | EnsemblPlants:AT4G04630.1 | TAIR:AT4G04630.1 | EMBL:AY084825 | Unigene:At.33987 |
| RefSeq:NP_567264.1 | PFAM:PF04520 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 | UniProt:Q8LFI5 |
| InterPro:Senescence_reg_S40 | UniParc:UPI000005EC65 | SEG:seg | : | : | : |
Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q8LFI5]
Coordinates
chr4:-:2331677..2332814
Molecular Weight (calculated)
18756.6 Da
IEP (calculated)
7.147
GRAVY (calculated)
-0.945
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLGSRRRT HNSRRVPSMG IEGDEEFQEE DVWSVLREGE TSSPEMKIPK SHFSSSSSSS SSPWNIRRSK EVSGVKQSSA PMNVPDWSKV YGDSKSNRRS
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.