Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94568 | Canola | nucleus | 99.33 | 99.33 |
| CDY16655 | Canola | nucleus | 93.33 | 83.83 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 78.67 | 70.24 |
| CDX94069 | Canola | nucleus | 61.33 | 58.6 |
| CDX98721 | Canola | nucleus | 61.33 | 58.6 |
| CDX82889 | Canola | nucleus | 59.33 | 58.55 |
| CDX79115 | Canola | nucleus | 59.33 | 58.17 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 37.33 | 56.57 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 42.0 | 46.67 |
| KRH20851 | Soybean | nucleus | 50.67 | 46.63 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 50.0 | 39.47 |
| PGSC0003DMT400042495 | Potato | nucleus | 40.0 | 39.22 |
| KRH51093 | Soybean | nucleus | 47.33 | 37.57 |
| Solyc02g080580.1.1 | Tomato | nucleus | 38.67 | 37.42 |
| KRH02067 | Soybean | nucleus | 44.67 | 36.22 |
| CDY46674 | Canola | nucleus | 34.0 | 34.0 |
| CDX92790 | Canola | nucleus | 33.33 | 33.56 |
| CDY62461 | Canola | nucleus | 29.33 | 27.85 |
| CDX77180 | Canola | nucleus | 30.0 | 27.27 |
| CDX79110 | Canola | nucleus | 31.33 | 27.17 |
| CDY65979 | Canola | nucleus | 28.67 | 27.04 |
| CDX82885 | Canola | nucleus | 30.67 | 26.59 |
| CDY20098 | Canola | nucleus | 34.0 | 24.76 |
| CDY11244 | Canola | cytosol | 29.33 | 24.72 |
| CDX70321 | Canola | nucleus | 28.67 | 24.43 |
| CDY10396 | Canola | nucleus | 28.67 | 24.43 |
| CDX80857 | Canola | cytosol | 28.67 | 24.02 |
| CDY32323 | Canola | nucleus | 32.0 | 23.19 |
| CDX97628 | Canola | nucleus | 33.33 | 23.15 |
| CDY12918 | Canola | cytosol | 30.0 | 22.73 |
| CDY68595 | Canola | nucleus | 32.67 | 22.69 |
| CDY19509 | Canola | cytosol | 29.33 | 22.22 |
| CDX97979 | Canola | mitochondrion | 30.0 | 22.06 |
| CDY49797 | Canola | mitochondrion | 30.0 | 21.95 |
| CDY34631 | Canola | nucleus | 29.33 | 21.89 |
| CDX82452 | Canola | nucleus | 31.33 | 20.89 |
| CDX75803 | Canola | nucleus | 30.67 | 19.49 |
Protein Annotations
| EnsemblPlants:CDY29096 | EnsemblPlantsGene:GSBRNA2T00041857001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 | PFAM:PF04520 |
| ProteinID:CDY29096 | ProteinID:CDY29096.1 | SEG:seg | UniParc:UPI0004EF14BD | UniProt:A0A078GUA2 | MapMan:35.2 |
Description
BnaC09g18220DBnaC09g18220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUA2]
Coordinates
chrLK032230:-:149001..149694
Molecular Weight (calculated)
16964.9 Da
IEP (calculated)
7.633
GRAVY (calculated)
-0.899
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLEGEDEFQ EEDVWSVLRE AKTPGHEIKV PKSHFTSPSS PTSFTSSPWN IRRSKEVSGE KQSSAPMNVP DWSKVYGNAK SKERTIHNLH SRDEDDDDGC
101: MVPPHEWVAR KLAKTQISSF SMCEGVGRTL KGRDLSKMRN AVLTKTGFLE
101: MVPPHEWVAR KLAKTQISSF SMCEGVGRTL KGRDLSKMRN AVLTKTGFLE
001: MDSLGSRRRT HNSRRVPSMG IEGDEEFQEE DVWSVLREGE TSSPEMKIPK SHFSSSSSSS SSPWNIRRSK EVSGVKQSSA PMNVPDWSKV YGDSKSNRRS
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q8LFI5]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.