Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97628 | Canola | nucleus | 97.22 | 97.22 |
| Bra027283.1-P | Field mustard | nucleus | 95.83 | 96.28 |
| CDX82452 | Canola | nucleus | 84.72 | 81.33 |
| CDY32323 | Canola | nucleus | 76.85 | 80.19 |
| VIT_06s0080g00750.t01 | Wine grape | cytosol | 18.52 | 80.0 |
| CDY20098 | Canola | nucleus | 75.93 | 79.61 |
| CDX75803 | Canola | nucleus | 83.33 | 76.27 |
| KRH26654 | Soybean | cytosol | 44.44 | 39.67 |
| KRH30402 | Soybean | nucleus | 41.67 | 38.63 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 29.63 | 37.87 |
| PGSC0003DMT400015061 | Potato | cytosol, mitochondrion, nucleus, plastid | 38.89 | 37.84 |
| KRH22667 | Soybean | nucleus | 40.74 | 35.77 |
| KRH25262 | Soybean | nucleus | 39.81 | 35.54 |
| CDY29096 | Canola | nucleus | 22.69 | 32.67 |
| CDX94568 | Canola | nucleus | 22.69 | 32.67 |
| EER94255 | Sorghum | mitochondrion, nucleus | 35.19 | 31.54 |
| TraesCS2A01G295700.1 | Wheat | nucleus | 33.8 | 30.93 |
| CDX98721 | Canola | nucleus | 22.22 | 30.57 |
| CDX94069 | Canola | nucleus | 22.22 | 30.57 |
| TraesCS2B01G312200.1 | Wheat | nucleus | 33.33 | 30.51 |
| TraesCS2D01G293600.1 | Wheat | nucleus | 33.8 | 30.42 |
| CDY62461 | Canola | nucleus | 22.22 | 30.38 |
| CDX77180 | Canola | nucleus | 23.15 | 30.3 |
| Os04t0413900-01 | Rice | nucleus | 34.26 | 30.2 |
| Zm00001d003775_P001 | Maize | cytosol, mitochondrion, nucleus | 34.26 | 29.84 |
| CDX82889 | Canola | nucleus | 20.83 | 29.61 |
| CDX79115 | Canola | nucleus | 20.83 | 29.41 |
| OQU81531 | Sorghum | nucleus | 34.26 | 29.37 |
| CDY16655 | Canola | nucleus | 22.69 | 29.34 |
| Zm00001d032976_P001 | Maize | mitochondrion, nucleus | 34.26 | 29.25 |
| CDY65979 | Canola | nucleus | 20.83 | 28.3 |
| CDX82885 | Canola | nucleus | 22.22 | 27.75 |
| CDX79110 | Canola | nucleus | 22.22 | 27.75 |
| CDY10396 | Canola | nucleus | 21.76 | 26.7 |
| CDX70321 | Canola | nucleus | 21.76 | 26.7 |
| CDY46674 | Canola | nucleus | 18.52 | 26.67 |
| CDX97979 | Canola | mitochondrion | 24.54 | 25.98 |
| CDY34631 | Canola | nucleus | 24.07 | 25.87 |
| CDX92790 | Canola | nucleus | 17.59 | 25.5 |
| CDY49797 | Canola | mitochondrion | 24.07 | 25.37 |
| CDY11244 | Canola | cytosol | 20.83 | 25.28 |
| CDX80857 | Canola | cytosol | 20.37 | 24.58 |
| CDY12918 | Canola | cytosol | 22.22 | 24.24 |
| CDY19509 | Canola | cytosol | 21.76 | 23.74 |
| Solyc06g074260.2.1 | Tomato | cytosol | 37.5 | 20.98 |
Protein Annotations
| EnsemblPlants:CDY68595 | EnsemblPlantsGene:GSBRNA2T00075986001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF42 | PFAM:PF04520 |
| ProteinID:CDY68595 | ProteinID:CDY68595.1 | SEG:seg | UniParc:UPI0004EF1742 | UniProt:A0A078JQ66 | MapMan:35.2 |
Description
BnaCnng59690DBnaCnng59690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ66]
Coordinates
chrLK037624:+:1077..2618
Molecular Weight (calculated)
23315.4 Da
IEP (calculated)
6.895
GRAVY (calculated)
-0.556
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKSPRIDIP PSSSPALASA DGELNEYDIF SIDVTHTPPS SSPSQHPPAR QLQRSKSGLK NVEASGILAA LPEPSGNSYL NHVFHHKPAA SSSPSSSSAR
101: TIPSAPKPPQ ERLPYTASFI GGGKFPQSAP VQVPLASLAM MNRHKKEFKL TDVVDEDEEE EEEEGEMLPP HEIVARSLAK SSLLSCSVLE GAGRTLKGRD
201: LRQVRNAVFR RTGFID
101: TIPSAPKPPQ ERLPYTASFI GGGKFPQSAP VQVPLASLAM MNRHKKEFKL TDVVDEDEEE EEEEGEMLPP HEIVARSLAK SSLLSCSVLE GAGRTLKGRD
201: LRQVRNAVFR RTGFID
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.