Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92790 | Canola | nucleus | 97.33 | 97.99 |
| Bra019080.1-P | Field mustard | nucleus | 98.0 | 97.35 |
| AT4G26950.1 | Thale cress | nucleus | 73.33 | 76.39 |
| KRH33098 | Soybean | cytosol | 33.33 | 38.46 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 33.33 | 37.04 |
| KRH14391 | Soybean | nucleus | 45.33 | 35.79 |
| CDX94069 | Canola | nucleus | 36.67 | 35.03 |
| CDX98721 | Canola | nucleus | 36.67 | 35.03 |
| KRH73758 | Soybean | nucleus | 44.67 | 34.36 |
| CDX82889 | Canola | nucleus | 34.67 | 34.21 |
| CDY29096 | Canola | nucleus | 34.0 | 34.0 |
| CDX94568 | Canola | nucleus | 34.0 | 34.0 |
| CDX79115 | Canola | nucleus | 32.67 | 32.03 |
| CDY16655 | Canola | nucleus | 34.67 | 31.14 |
| KRH46190 | Soybean | cytosol | 44.0 | 31.13 |
| VIT_19s0090g00510.t01 | Wine grape | plastid | 43.33 | 28.02 |
| KRG98750 | Soybean | nucleus | 37.33 | 26.92 |
| CDY62461 | Canola | nucleus | 25.33 | 24.05 |
| CDY65979 | Canola | nucleus | 25.33 | 23.9 |
| CDX79110 | Canola | nucleus | 27.33 | 23.7 |
| CDX77180 | Canola | nucleus | 25.33 | 23.03 |
| CDX82885 | Canola | nucleus | 26.0 | 22.54 |
| CDY12918 | Canola | cytosol | 28.0 | 21.21 |
| CDY19509 | Canola | cytosol | 28.0 | 21.21 |
| CDX97979 | Canola | mitochondrion | 28.0 | 20.59 |
| CDY49797 | Canola | mitochondrion | 28.0 | 20.49 |
| CDY34631 | Canola | nucleus | 27.33 | 20.4 |
| CDX70321 | Canola | nucleus | 23.33 | 19.89 |
| CDY10396 | Canola | nucleus | 23.33 | 19.89 |
| CDY11244 | Canola | cytosol | 23.33 | 19.66 |
| CDX80857 | Canola | cytosol | 23.33 | 19.55 |
| CDY32323 | Canola | nucleus | 26.67 | 19.32 |
| CDX97628 | Canola | nucleus | 27.33 | 18.98 |
| CDY68595 | Canola | nucleus | 26.67 | 18.52 |
| CDY20098 | Canola | nucleus | 24.67 | 17.96 |
| CDX82452 | Canola | nucleus | 26.0 | 17.33 |
| CDX75803 | Canola | nucleus | 26.0 | 16.53 |
Protein Annotations
| EnsemblPlants:CDY46674 | EnsemblPlantsGene:GSBRNA2T00085975001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 | PFAM:PF04520 |
| ProteinID:CDY46674 | ProteinID:CDY46674.1 | SEG:seg | UniParc:UPI0004EE6DCD | UniProt:A0A078IBG3 | MapMan:35.2 |
Description
BnaA03g48340DBnaA03g48340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBG3]
Coordinates
chrLK032681:+:90693..91145
Molecular Weight (calculated)
17395.5 Da
IEP (calculated)
8.866
GRAVY (calculated)
-1.031
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNIKRYDV WRSLKDGDYQ EEDVWDVLDG YHQPSLMISN HTSKPSLLAQ TFLSSEPRMI PERQRREGMA HMGQHSAPVN VPEWSMVHRK KTKKAEDDDD
101: DENVSPEEYF LRRSRSSSSS SVMEGIGRKL KGRDLSKVRN AVLKKTGFLE
101: DENVSPEEYF LRRSRSSSSS SVMEGIGRKL KGRDLSKVRN AVLKKTGFLE
001: MEKSYMKHEL WGDGDFQEDD VWDVLDGYQS PFMISSNHTT KPSFSTQTLL PSEPRMIPER QRTEGMAPMR QQSVPVNVPD WSMVQRKKTK KVVDDENVSP
101: EEYFLRRSRS SSSSSVMEGV GRKLKGRDLS KVRNAILKQT GFLE
101: EEYFLRRSRS SSSSSVMEGV GRKLKGRDLS KVRNAILKQT GFLE
Arabidopsis Description
At4g26950 [Source:UniProtKB/TrEMBL;Acc:Q9SZ34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.