Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001580.1-P | Field mustard | nucleus | 91.95 | 96.44 |
| CDX82452 | Canola | nucleus | 91.95 | 96.44 |
| CDX97628 | Canola | nucleus | 76.69 | 83.8 |
| CDY68595 | Canola | nucleus | 76.27 | 83.33 |
| CDY20098 | Canola | nucleus | 69.92 | 80.1 |
| VIT_06s0080g00750.t01 | Wine grape | cytosol | 16.53 | 78.0 |
| CDY32323 | Canola | nucleus | 66.95 | 76.33 |
| KRH26654 | Soybean | cytosol | 39.83 | 38.84 |
| PGSC0003DMT400015061 | Potato | cytosol, mitochondrion, nucleus, plastid | 36.02 | 38.29 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 26.27 | 36.69 |
| KRH30402 | Soybean | nucleus | 36.02 | 36.48 |
| KRH22667 | Soybean | nucleus | 37.71 | 36.18 |
| EER94255 | Sorghum | mitochondrion, nucleus | 34.32 | 33.61 |
| Os04t0413900-01 | Rice | nucleus | 33.47 | 32.24 |
| KRH25262 | Soybean | nucleus | 33.05 | 32.23 |
| TraesCS2B01G312200.1 | Wheat | nucleus | 31.78 | 31.78 |
| Zm00001d003775_P001 | Maize | cytosol, mitochondrion, nucleus | 33.05 | 31.45 |
| TraesCS2A01G295700.1 | Wheat | nucleus | 31.36 | 31.36 |
| TraesCS2D01G293600.1 | Wheat | nucleus | 31.78 | 31.25 |
| Zm00001d032976_P001 | Maize | mitochondrion, nucleus | 33.47 | 31.23 |
| CDX77180 | Canola | nucleus | 21.61 | 30.91 |
| CDY29096 | Canola | nucleus | 19.49 | 30.67 |
| CDX94568 | Canola | nucleus | 19.49 | 30.67 |
| CDY62461 | Canola | nucleus | 20.34 | 30.38 |
| OQU81531 | Sorghum | nucleus | 31.78 | 29.76 |
| CDY65979 | Canola | nucleus | 19.49 | 28.93 |
| CDX94069 | Canola | nucleus | 19.07 | 28.66 |
| CDX98721 | Canola | nucleus | 19.07 | 28.66 |
| CDX82889 | Canola | nucleus | 18.22 | 28.29 |
| CDY16655 | Canola | nucleus | 19.92 | 28.14 |
| CDX79115 | Canola | nucleus | 17.8 | 27.45 |
| CDY46674 | Canola | nucleus | 16.53 | 26.0 |
| CDX70321 | Canola | nucleus | 19.07 | 25.57 |
| CDY10396 | Canola | nucleus | 19.07 | 25.57 |
| CDX97979 | Canola | mitochondrion | 22.03 | 25.49 |
| CDX82885 | Canola | nucleus | 18.64 | 25.43 |
| CDX79110 | Canola | nucleus | 18.64 | 25.43 |
| CDY34631 | Canola | nucleus | 21.61 | 25.37 |
| CDY49797 | Canola | mitochondrion | 21.61 | 24.88 |
| CDX92790 | Canola | nucleus | 15.68 | 24.83 |
| CDY12918 | Canola | cytosol | 20.76 | 24.75 |
| CDY19509 | Canola | cytosol | 20.34 | 24.24 |
| CDY11244 | Canola | cytosol | 18.22 | 24.16 |
| CDX80857 | Canola | cytosol | 17.8 | 23.46 |
| Solyc06g074260.2.1 | Tomato | cytosol | 34.75 | 21.24 |
Protein Annotations
| EnsemblPlants:CDX75803 | EnsemblPlantsGene:GSBRNA2T00123758001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF42 | PFAM:PF04520 |
| ProteinID:CDX75803 | ProteinID:CDX75803.1 | SEG:seg | UniParc:UPI0004EC2CC4 | MapMan:35.2 | : |
Description
BnaC03g38860D
Coordinates
chrLK031805:-:818386..819485
Molecular Weight (calculated)
25326.7 Da
IEP (calculated)
10.236
GRAVY (calculated)
-0.622
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNSRNLRSQ EVKTKMNKTA RIDIPSSSAP APASADGELN EDDIFSIDIS HAPKHSPSSS PAQHPPARQL QRTKSGLKNV EASGILAALP EPSGNSYLNH
101: VFHHKPAAAL STSVSSTASS TSSSSSARII PSAPKPPQER VPFTGGGGRY PQSAPLQVPL AMRSRHKKEF KLTDAVVDEE EEDEGERLPP HEIVARSLAK
201: SSLLSCSVLE GAGRTLKGRD LRQVRNAVFR RTGFID
101: VFHHKPAAAL STSVSSTASS TSSSSSARII PSAPKPPQER VPFTGGGGRY PQSAPLQVPL AMRSRHKKEF KLTDAVVDEE EEDEGERLPP HEIVARSLAK
201: SSLLSCSVLE GAGRTLKGRD LRQVRNAVFR RTGFID
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.