Factsheet for Bra001580.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82452	Canola	nucleus	100.0	100.0
CDX75803	Canola	nucleus	96.44	91.95
Bra027283.1-P	Field mustard	nucleus	81.33	85.12
Bra021587.1-P	Field mustard	nucleus	79.56	81.36
VIT_06s0080g00750.t01	Wine grape	cytosol	17.33	78.0
KRH26654	Soybean	cytosol	42.22	39.26
PGSC0003DMT400015061	Potato	cytosol, mitochondrion, nucleus, plastid	36.89	37.39
KRH30402	Soybean	nucleus	38.67	37.34
KRH22667	Soybean	nucleus	40.0	36.59
GSMUA_Achr6P06990_001	Banana	mitochondrion, nucleus	27.11	36.09
KRH25262	Soybean	nucleus	35.56	33.06
EER94255	Sorghum	mitochondrion, nucleus	34.67	32.37
Os04t0413900-01	Rice	nucleus	34.67	31.84
TraesCS2B01G312200.1	Wheat	nucleus	33.33	31.78
Bra029510.1-P	Field mustard	nucleus	20.89	31.54
TraesCS2A01G295700.1	Wheat	nucleus	32.89	31.36
Bra020237.1-P	Field mustard	nucleus	23.11	31.33
TraesCS2D01G293600.1	Wheat	nucleus	33.33	31.25
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	34.22	31.05
Zm00001d032976_P001	Maize	mitochondrion, nucleus	33.78	30.04
OQU81531	Sorghum	nucleus	32.89	29.37
Bra002459.1-P	Field mustard	nucleus	20.44	28.75
Bra019408.1-P	Field mustard	nucleus	20.0	28.66
Bra013577.1-P	Field mustard	nucleus	18.67	27.45
Bra009543.1-P	Field mustard	nucleus	20.44	26.14
Bra013574.1-P	Field mustard	cytosol	20.0	26.01
Bra019080.1-P	Field mustard	nucleus	17.33	25.83
Bra019837.1-P	Field mustard	mitochondrion	22.67	24.88
Bra005738.1-P	Field mustard	cytosol	19.56	24.72
Bra027071.1-P	Field mustard	cytosol	20.89	23.74
Solyc06g074260.2.1	Tomato	cytosol	35.56	20.73
Bra035703.1-P	Field mustard	cytosol	20.89	19.11

Protein Annotations

EnsemblPlants:Bra001580.1	EnsemblPlants:Bra001580.1-P	EnsemblPlantsGene:Bra001580	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF42
PFAM:PF04520	SEG:seg	UniParc:UPI00025409E8	UniProt:M4CBK0	MapMan:35.2	:

Description

AT3G15040 (E=3e-043) | unknown protein

Coordinates

chrA03:-:17174918..17175595

Molecular Weight (calculated)

24015.1 Da

IEP (calculated)

8.524

GRAVY (calculated)

-0.535

Length

225 amino acids

Sequence
(BLAST)

001: MNKTARIDIP SSSSPAPASA DGELNEDDIF SIDITHAPKH SPSSSPAQHP PARQLQRTKS GLKNVEASGI LAALPEPSGN SYLNHVFHHK PAAVLSTSVS
101: STASSTSSSS SARIIPSAPK PPQERVPFTA SLGGGGRYPQ SAPLQVPLAM RSRHKKEFKL TDAVVDEEEE EDEGERLPPH EIVARSLAQS SLLSCSVLEG
201: AGRTLKGRDL RQVRNAVFRR TGFID

Best Arabidopsis Sequence Match ( AT3G15040.1 )
(BLAST)

001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID

Arabidopsis Description

At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.