Factsheet for PGSC0003DMT400015061

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g00750.t01	Wine grape	cytosol	14.41	64.0
Solyc06g074260.2.1	Tomato	cytosol	95.05	54.66
KRH30402	Soybean	nucleus	45.05	42.92
KRH26654	Soybean	cytosol	45.5	41.74
KRH22667	Soybean	nucleus	45.05	40.65
GSMUA_Achr6P06990_001	Banana	mitochondrion, nucleus	30.18	39.65
Bra027283.1-P	Field mustard	nucleus	38.29	39.53
CDX97628	Canola	nucleus	38.29	39.35
KRH25262	Soybean	nucleus	42.79	39.26
CDY68595	Canola	nucleus	37.84	38.89
CDY32323	Canola	nucleus	36.04	38.65
Bra021587.1-P	Field mustard	nucleus	36.94	37.27
CDX82452	Canola	nucleus	37.39	36.89
Bra001580.1-P	Field mustard	nucleus	37.39	36.89
CDY20098	Canola	nucleus	33.78	36.41
AT3G15040.1	Thale cress	nucleus	39.64	36.21
CDX75803	Canola	nucleus	38.29	36.02
EER94255	Sorghum	mitochondrion, nucleus	38.74	35.68
Zm00001d032976_P001	Maize	mitochondrion, nucleus	39.64	34.78
PGSC0003DMT400023089	Potato	cytosol	37.39	34.58
OQU81531	Sorghum	nucleus	37.84	33.33
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	36.94	33.06
Os04t0413900-01	Rice	nucleus	36.49	33.06
PGSC0003DMT400090902	Potato	cytosol, plastid	30.63	32.85
PGSC0003DMT400072600	Potato	nucleus	35.59	32.78
PGSC0003DMT400045373	Potato	cytosol	21.62	32.65
TraesCS2B01G312200.1	Wheat	nucleus	34.68	32.63
TraesCS2D01G293600.1	Wheat	nucleus	34.68	32.08
TraesCS2A01G295700.1	Wheat	nucleus	33.78	31.78
PGSC0003DMT400020798	Potato	plastid	24.32	31.76
PGSC0003DMT400062500	Potato	nucleus	22.52	29.24
PGSC0003DMT400032972	Potato	mitochondrion	24.77	27.64
PGSC0003DMT400042431	Potato	mitochondrion, nucleus	25.68	27.54
PGSC0003DMT400042495	Potato	nucleus	18.47	26.8
PGSC0003DMT400057474	Potato	nucleus	22.97	26.29
PGSC0003DMT400055482	Potato	cytosol	18.92	26.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400015061	EnsemblPlantsGene:PGSC0003DMG400005883	EntrezGene:102600210	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF16
PFAM:PF04520	PGSC:PGSC0003DMG400005883	RefSeq:XP_006361080.1	SEG:seg	UniParc:UPI000296C12A	UniProt:M1A5D0
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005883]

Coordinates

chr6:-:54792727..54794001

Molecular Weight (calculated)

23691.5 Da

IEP (calculated)

9.553

GRAVY (calculated)

-0.539

Length

222 amino acids

Sequence
(BLAST)

001: MDSGGGGPNN SRYQRKLPSS DRLLGIFSTA HSQSQPSIST SASTSAAEVE LSEHDIFDAS SDAIQHSTPS TSTSPNANYH RSPNHLSHHK HFGILAALPE
101: SESHAQALLS VSSSSSSSST SSARLIPTIP KRPPPVDRVK YLQSAPVNVP VMSAAARRRG RHFDDVDDDV DGGEMLPPHE IVASRKTPIL ASSVVEGAGR
201: KLKGRDLRQV RDAILQKTGF LT

Best Arabidopsis Sequence Match ( AT3G15040.1 )
(BLAST)

001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID

Arabidopsis Description

At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.