CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	89.29	90.73
Os04t0413900-01	Rice	nucleus	77.78	80.0
TraesCS2B01G312200.1	Wheat	nucleus	73.02	77.97
TraesCS2D01G293600.1	Wheat	nucleus	73.41	77.08
TraesCS2A01G295700.1	Wheat	nucleus	71.03	75.85
VIT_06s0080g00750.t01	Wine grape	cytosol	14.29	72.0
EER94255	Sorghum	mitochondrion, nucleus	57.94	60.58
Solyc10g083260.1.1	Tomato	nucleus	16.27	55.41
GSMUA_Achr6P06990_001	Banana	mitochondrion, nucleus	33.73	50.3
EES15690	Sorghum	cytosol, mitochondrion, plastid	29.37	42.77
EES01798	Sorghum	mitochondrion, nucleus	32.94	40.1
KRH67951	Soybean	cytosol, plastid	33.73	38.99
KRH30402	Soybean	nucleus	35.71	38.63
CDY32323	Canola	nucleus	31.35	38.16
PGSC0003DMT400015061	Potato	cytosol, mitochondrion, nucleus, plastid	33.33	37.84
VIT_08s0007g02950.t01	Wine grape	nucleus	31.75	36.7
KRH26654	Soybean	cytosol	34.92	36.36
PGSC0003DMT400023089	Potato	cytosol	34.52	36.25
Solyc09g010140.1.1	Tomato	cytosol	34.52	36.25
KRH22667	Soybean	nucleus	35.32	36.18
CDY20098	Canola	nucleus	29.37	35.92
Bra021587.1-P	Field mustard	nucleus	31.35	35.91
EES11200	Sorghum	mitochondrion	30.56	35.65
PGSC0003DMT400072600	Potato	nucleus	33.73	35.27
CDX97628	Canola	nucleus	30.16	35.19
Bra027283.1-P	Field mustard	nucleus	29.76	34.88
CDY68595	Canola	nucleus	29.37	34.26
Bra001580.1-P	Field mustard	nucleus	29.37	32.89
CDX82452	Canola	nucleus	29.37	32.89
KRG96207	Soybean	plastid	33.73	31.95
KRH25262	Soybean	nucleus	30.56	31.82
CDX75803	Canola	nucleus	29.76	31.78
AT3G15040.1	Thale cress	nucleus	30.56	31.69
EER99449	Sorghum	mitochondrion	24.21	31.44
EER91475	Sorghum	mitochondrion	22.62	30.0
EER97815	Sorghum	mitochondrion	19.84	29.76
KXG26730	Sorghum	mitochondrion	21.83	28.8
Solyc06g074260.2.1	Tomato	cytosol	31.75	20.73

Protein Annotations

EnsemblPlants:OQU81531	EnsemblPlantsGene:SORBI_3006G072400	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF15	PFAM:PF04520
ProteinID:OQU81531	ProteinID:OQU81531.1	SEG:seg	UniParc:UPI000B424E2A	UniProt:A0A1Z5RDG2	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:+:43429842..43432200

Molecular Weight (calculated)

25803.1 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.358

Length

252 amino acids

Sequence
(BLAST)

001: MDEYRTPRRS PAGERFIGMF SSPSTPSSSP TEPSFVAGDE LHEDDFLFDA AAPQPDAARS PGRGAPPGHL GLLAALALHE GDKRLLVRGG HGGGVAAAAA
101: AASAGTLLRR KATIAAAAAS ASASVASGSA GALSPTQSPS PTSSAWAIPA TARPKNAGPA PAFHQSAPVK VPVRPPRKPD MGRWDEFDDD DDDFRSGDAA
201: MLPPHEMVAR ASAGGAGPAA PFSMLEGAGR TLKGRDLRRV RDAVLRQTGF LD

Best Arabidopsis Sequence Match ( AT1G29640.1 )
(BLAST)

001: MSEEFDESEI IFSDNYFPIR RREDGNEKEN NRPVDFRENS ERVWNKSSRR SKTTPLPSAV TAFSSSLPVN IPMRRYSTEE EYSDDDGGRK MIPPHLIVGR
101: RMEGGQMAFS VCTGNGRTLK GRDLSRVRNS VLKLTGFLEA

Arabidopsis Description

At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.