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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • plastid 2
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d023440_P001 Maize cytosol, peroxisome, plastid 84.97 86.98
TraesCS5B01G126400.1 Wheat cytosol 70.52 77.71
TraesCS5A01G127300.1 Wheat cytosol 69.36 76.43
TraesCS5D01G134900.1 Wheat cytosol 68.79 75.8
HORVU0Hr1G038250.1 Barley cytosol 67.05 73.89
Os11t0154300-01 Rice cytosol, mitochondrion, plastid 62.43 63.16
GSMUA_Achr11P... Banana cytosol 28.32 44.14
GSMUA_AchrUn_... Banana cytosol 16.76 42.03
GSMUA_Achr10P... Banana nucleus 39.31 33.17
EER91475 Sorghum mitochondrion 35.84 32.63
EES11200 Sorghum mitochondrion 40.46 32.41
EER94255 Sorghum mitochondrion, nucleus 42.77 30.71
EES01798 Sorghum mitochondrion, nucleus 35.26 29.47
OQU81531 Sorghum nucleus 42.77 29.37
EER97815 Sorghum mitochondrion 27.17 27.98
EER99449 Sorghum mitochondrion 30.64 27.32
KXG26730 Sorghum mitochondrion 26.59 24.08
Protein Annotations
EnsemblPlants:EES15690EnsemblPlantsGene:SORBI_3008G040400EntrezGene:8079835InterPro:Senescence_reg_S40PANTHER:PTHR33083PANTHER:PTHR33083:SF20
PFAM:PF04520ProteinID:EES15690ProteinID:EES15690.1RefSeq:XP_002441852.1SEG:segUniParc:UPI0001A885E5
UniProt:C5YS46MapMan:35.2::::
Description
hypothetical protein
Coordinates
chr8:+:3901440..3905193
Molecular Weight (calculated)
17700.2 Da
IEP (calculated)
11.520
GRAVY (calculated)
-0.176
Length
173 amino acids
Sequence
(BLAST)
001: MDRFLLSRPP LPVPTHAAAA AGADGDLLEL DVLWPATPSS AVGLGLLAAL PEDEGKKKKR AAGPVGGVGG PVRSAARHVP ETAAGSGSAM AARSAPVRIP
101: SDPARRGRWA HAGAWAGGSA EDTGEAVVPP HEIVARRAAA HSSVLEGAGR TLKGRDLRRV RNAVLRRTGF LVD
Best Arabidopsis Sequence Match ( AT3G15040.1 )
(BLAST)
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.