CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G266500.1	Wheat	mitochondrion, nucleus	55.36	52.25
TraesCS2B01G286300.1	Wheat	mitochondrion, nucleus	55.36	51.67
TraesCS2A01G256200.1	Wheat	mitochondrion, nucleus	55.95	51.65
HORVU2Hr1G064730.1	Barley	cytosol	53.57	51.14
GSMUA_Achr7P00240_001	Banana	extracellular	22.62	44.19
VIT_10s0116g01810.t01	Wine grape	mitochondrion, nucleus	43.45	37.82
KRH20860	Soybean	mitochondrion	42.26	36.41
KRH11426	Soybean	mitochondrion	41.07	35.75
CDX79110	Canola	nucleus	36.31	35.26
VIT_10s0116g01820.t01	Wine grape	mitochondrion, nucleus	43.45	34.27
Bra013574.1-P	Field mustard	cytosol	35.12	34.1
CDX82885	Canola	nucleus	35.12	34.1
GSMUA_AchrUn_...	Banana	nucleus	36.9	34.07
GSMUA_Achr4P33500_001	Banana	nucleus	36.9	33.88
AT4G21930.1	Thale cress	cytosol	36.9	33.88
Solyc02g080510.1.1	Tomato	mitochondrion	40.48	33.01
KRH02073	Soybean	nucleus	41.07	32.39
PGSC0003DMT400042431	Potato	mitochondrion, nucleus	39.88	32.37
PGSC0003DMT400032972	Potato	mitochondrion	38.1	32.16
AT1G11700.1	Thale cress	nucleus	37.5	31.34
CDY12918	Canola	cytosol	36.9	31.31
Solyc02g032800.1.1	Tomato	nucleus	39.29	30.7
Bra027071.1-P	Field mustard	cytosol	35.71	30.3
CDY19509	Canola	cytosol	35.71	30.3
AT1G61930.1	Thale cress	cytosol	36.31	30.05
CDX97979	Canola	mitochondrion	36.31	29.9
EER99449	Sorghum	mitochondrion	34.52	29.9
KRH51082	Soybean	nucleus	41.07	29.87
CDY49797	Canola	mitochondrion	36.31	29.76
Bra019837.1-P	Field mustard	mitochondrion	36.31	29.76
CDY34631	Canola	nucleus	34.52	28.86
EES15690	Sorghum	cytosol, mitochondrion, plastid	27.98	27.17
GSMUA_Achr6P00350_001	Banana	cytosol, nucleus, plastid	27.38	26.9
EES11200	Sorghum	mitochondrion	33.93	26.39
EER91475	Sorghum	mitochondrion	28.57	25.26
KXG26730	Sorghum	mitochondrion	27.98	24.61
EES01798	Sorghum	mitochondrion, nucleus	29.17	23.67
EER94255	Sorghum	mitochondrion, nucleus	28.57	19.92
OQU81531	Sorghum	nucleus	29.76	19.84

Protein Annotations

EnsemblPlants:EER97815	EnsemblPlantsGene:SORBI_3002G001900	EntrezGene:8081577	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF41
PFAM:PF04520	ProteinID:EER97815	ProteinID:EER97815.1	RefSeq:XP_002461294.1	SEG:seg	UniParc:UPI0001A83759
UniProt:C5X731	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:274528..276389

Molecular Weight (calculated)

18060.7 Da

IEP (calculated)

6.602

GRAVY (calculated)

-0.543

Length

168 amino acids

Sequence
(BLAST)

001: MGSRGRSSYY GNRGGVGFFG SSSSERLLHP AAARHDVSAS AAVADHLADL DEEDVWSAVT TNDNNQHHRD GGALVHHRRP DPAYGLSLAF EAAPARHSAP
101: VSVPEWPAAT LPDYDGGDLE WVPPHEYLQR RWCGAGGASV LEGAGRTLKG RDITRVRDAV WSKTGFFG

Best Arabidopsis Sequence Match ( AT1G61930.1 )
(BLAST)

001: MAKGRKPTTM NRSDRYLGSY TYGDSHGNSV TDELELGEED IWSPAVIHDD TTENEESYGT WNLRATLGKN GRVGGLSLAF EGSLVAPPSS SPMIVQKIHG
101: GGGEGEEDRR KLASSAPVNV PDWSKIYRVD SVESIHELDD EDDEDEESGM MPPHEYLAKS QARRSRKIGG GGASVFDGVG RTLKGRELRR VRDAIWSQTG
201: FYG

Arabidopsis Description

At1g61930 [Source:UniProtKB/TrEMBL;Acc:O80698]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.