CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002798_P001	Maize	mitochondrion	82.41	85.17
Zm00001d025967_P001	Maize	nucleus	79.63	81.52
Os04t0542000-01	Rice	cytosol, nucleus, plastid	69.91	72.25
TraesCS2B01G407800.1	Wheat	nucleus	64.81	69.65
TraesCS2A01G391200.1	Wheat	nucleus	64.81	69.65
HORVU2Hr1G092750.1	Barley	cytosol, mitochondrion, nucleus, plastid	64.35	69.15
TraesCS2D01G387500.1	Wheat	cytosol, nucleus, plastid	64.35	68.81
GSMUA_Achr11P...	Banana	cytosol	22.69	44.14
GSMUA_AchrUn_...	Banana	cytosol	12.96	40.58
EES15690	Sorghum	cytosol, mitochondrion, plastid	32.41	40.46
EER97815	Sorghum	mitochondrion	26.39	33.93
EES01798	Sorghum	mitochondrion, nucleus	32.41	33.82
GSMUA_Achr10P...	Banana	nucleus	31.02	32.68
KXG26730	Sorghum	mitochondrion	28.7	32.46
EER99449	Sorghum	mitochondrion	28.7	31.96
EER91475	Sorghum	mitochondrion	27.31	31.05
EER94255	Sorghum	mitochondrion, nucleus	34.26	30.71
OQU81531	Sorghum	nucleus	35.65	30.56

Protein Annotations

EnsemblPlants:EES11200	EnsemblPlantsGene:SORBI_3006G164100	EntrezGene:8083337	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF8
PFAM:PF04520	ProteinID:EES11200	ProteinID:EES11200.1	ProteinID:OQU82051.1	RefSeq:XP_002446872.1	SEG:seg
UniParc:UPI0001A86F57	UniProt:C5YD16	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:52182622..52184552

Molecular Weight (calculated)

23116.9 Da

IEP (calculated)

9.111

GRAVY (calculated)

-0.581

Length

216 amino acids

Sequence
(BLAST)

001: MSTPRRRLVT TASPSLRFLG LLKQPDDAPS AHGGVQEPLE LDERDVVWSS SSSSSAASSP SPTPSPSSSS SASSLRRPIS TSSRHFPGAG SMGLSALLAD
101: DNHHHALTTA PVPAVARPER QHAPQPYHQS APMAVPAWPK AMTAADRRRR EAELQTAAYF DDDDDDSEPV VPPHEMAARR AAAAASVMEG AGRTLKGRDL
201: RRVRNAVWRT TGFLDL

Best Arabidopsis Sequence Match ( AT3G15040.1 )
(BLAST)

001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID

Arabidopsis Description

At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.