CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032976_P001	Maize	mitochondrion, nucleus	94.19	89.72
VIT_06s0080g00750.t01	Wine grape	cytosol	16.18	78.0
OQU81531	Sorghum	nucleus	60.58	57.94
Solyc10g083260.1.1	Tomato	nucleus	16.18	52.7
GSMUA_Achr6P06990_001	Banana	mitochondrion, nucleus	34.85	49.7
EES15690	Sorghum	cytosol, mitochondrion, plastid	30.71	42.77
EES01798	Sorghum	mitochondrion, nucleus	34.85	40.58
KRH67951	Soybean	cytosol, plastid	36.1	39.91
PGSC0003DMT400015061	Potato	cytosol, mitochondrion, nucleus, plastid	35.68	38.74
KRH30402	Soybean	nucleus	37.34	38.63
CDY32323	Canola	nucleus	31.95	37.2
VIT_08s0007g02950.t01	Wine grape	nucleus	33.61	37.16
KRH22667	Soybean	nucleus	37.34	36.59
KRH26654	Soybean	cytosol	36.51	36.36
Bra027283.1-P	Field mustard	nucleus	31.95	35.81
CDX97628	Canola	nucleus	31.95	35.65
Bra021587.1-P	Field mustard	nucleus	32.37	35.45
Solyc09g010140.1.1	Tomato	cytosol	35.27	35.42
PGSC0003DMT400023089	Potato	cytosol	35.27	35.42
CDY68595	Canola	nucleus	31.54	35.19
CDY20098	Canola	nucleus	29.88	34.95
PGSC0003DMT400072600	Potato	nucleus	34.85	34.85
Bra001580.1-P	Field mustard	nucleus	32.37	34.67
CDX82452	Canola	nucleus	32.37	34.67
CDX75803	Canola	nucleus	33.61	34.32
EES11200	Sorghum	mitochondrion	30.71	34.26
AT3G15040.1	Thale cress	nucleus	34.44	34.16
KRG96207	Soybean	plastid	35.27	31.95
KRH25262	Soybean	nucleus	31.54	31.41
EER99449	Sorghum	mitochondrion	24.07	29.9
EER91475	Sorghum	mitochondrion	22.82	28.95
EER97815	Sorghum	mitochondrion	19.92	28.57
KXG26730	Sorghum	mitochondrion	19.92	25.13
Solyc06g074260.2.1	Tomato	cytosol	33.61	20.98

Protein Annotations

EnsemblPlants:EER94255	EnsemblPlantsGene:SORBI_3001G250600	EntrezGene:8075873	InterPro:Senescence_reg_S40	ncoils:Coil	PANTHER:PTHR33083
PANTHER:PTHR33083:SF15	PFAM:PF04520	ProteinID:EER94255	ProteinID:EER94255.1	RefSeq:XP_002467257.1	SEG:seg
UniParc:UPI0001A832E5	UniProt:C5WM57	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:27080741..27081522

Molecular Weight (calculated)

24799.2 Da

IEP (calculated)

9.682

GRAVY (calculated)

-0.385

Length

241 amino acids

Sequence
(BLAST)

001: MDSPGRPRRS PPADRFLGLF SSPSHSLAAS SPSAGDELLE GDLLFPAPPS STDPPPDASK NPHLGLLAAL HEGDRKVRGR GGAAAVAAST ATAGASGTLL
101: RRKATIAAAA AAASASSVTP SLSPTSASRA IPVAPRPRDP ELPPAAPYHQ SAPVLVPVPP PWSRGRKWDK LADGDDDDEE LFHGDAAMLP PHEMVARASA
201: GAGYASPGKP SSMLEGVGRT LKGRDLRRVR DAVLRQTGFL D

Best Arabidopsis Sequence Match ( AT3G15040.1 )
(BLAST)

001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID

Arabidopsis Description

At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.