Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021587.1-P | Field mustard | nucleus | 99.51 | 93.18 |
| CDY32323 | Canola | nucleus | 90.29 | 89.86 |
| VIT_06s0080g00750.t01 | Wine grape | cytosol | 18.93 | 78.0 |
| CDX97628 | Canola | nucleus | 80.58 | 76.85 |
| CDY68595 | Canola | nucleus | 79.61 | 75.93 |
| CDX82452 | Canola | nucleus | 82.52 | 75.56 |
| CDX75803 | Canola | nucleus | 80.1 | 69.92 |
| AT3G15040.1 | Thale cress | nucleus | 80.58 | 68.31 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 29.61 | 36.09 |
| KRH26654 | Soybean | cytosol | 42.23 | 35.95 |
| KRH22667 | Soybean | nucleus | 42.23 | 35.37 |
| KRH30402 | Soybean | nucleus | 38.84 | 34.33 |
| CDY29096 | Canola | nucleus | 24.76 | 34.0 |
| CDX94568 | Canola | nucleus | 24.76 | 34.0 |
| PGSC0003DMT400015061 | Potato | cytosol, mitochondrion, nucleus, plastid | 36.41 | 33.78 |
| CDY16655 | Canola | nucleus | 25.24 | 31.14 |
| KRH25262 | Soybean | nucleus | 35.92 | 30.58 |
| EER94255 | Sorghum | mitochondrion, nucleus | 34.95 | 29.88 |
| TraesCS2B01G312200.1 | Wheat | nucleus | 33.98 | 29.66 |
| CDX79110 | Canola | nucleus | 24.76 | 29.48 |
| OQU81531 | Sorghum | nucleus | 35.92 | 29.37 |
| TraesCS2A01G295700.1 | Wheat | nucleus | 33.5 | 29.24 |
| TraesCS2D01G293600.1 | Wheat | nucleus | 33.98 | 29.17 |
| CDY62461 | Canola | nucleus | 22.33 | 29.11 |
| CDX77180 | Canola | nucleus | 23.3 | 29.09 |
| Os04t0413900-01 | Rice | nucleus | 34.47 | 28.98 |
| CDX98721 | Canola | nucleus | 21.84 | 28.66 |
| CDX94069 | Canola | nucleus | 21.84 | 28.66 |
| Zm00001d003775_P001 | Maize | cytosol, mitochondrion, nucleus | 34.47 | 28.63 |
| CDX82885 | Canola | nucleus | 23.79 | 28.32 |
| Zm00001d032976_P001 | Maize | mitochondrion, nucleus | 33.98 | 27.67 |
| CDX82889 | Canola | nucleus | 20.39 | 27.63 |
| CDX79115 | Canola | nucleus | 20.39 | 27.45 |
| CDY65979 | Canola | nucleus | 19.9 | 25.79 |
| CDY12918 | Canola | cytosol | 23.79 | 24.75 |
| CDY46674 | Canola | nucleus | 17.96 | 24.67 |
| CDY19509 | Canola | cytosol | 23.3 | 24.24 |
| CDX92790 | Canola | nucleus | 17.48 | 24.16 |
| CDX97979 | Canola | mitochondrion | 23.3 | 23.53 |
| CDY49797 | Canola | mitochondrion | 23.3 | 23.41 |
| CDY34631 | Canola | nucleus | 22.82 | 23.38 |
| CDY10396 | Canola | nucleus | 19.9 | 23.3 |
| CDX70321 | Canola | nucleus | 19.9 | 23.3 |
| CDY11244 | Canola | cytosol | 18.93 | 21.91 |
| CDX80857 | Canola | cytosol | 18.45 | 21.23 |
| Solyc06g074260.2.1 | Tomato | cytosol | 34.95 | 18.65 |
Protein Annotations
| EnsemblPlants:CDY20098 | EnsemblPlantsGene:GSBRNA2T00009951001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF42 | PFAM:PF04520 |
| ProteinID:CDY20098 | ProteinID:CDY20098.1 | SEG:seg | UniParc:UPI0004EE2B7E | UniProt:A0A078G639 | MapMan:35.2 |
Description
BnaA01g29040DBnaA01g29040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G639]
Coordinates
chrLK032103:-:147257..148520
Molecular Weight (calculated)
22193.0 Da
IEP (calculated)
7.875
GRAVY (calculated)
-0.533
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKNTRIDIP SSSSPSLASA DGELHEDDIF AIDITHAPRP SPTQQQHPPA RHLQRSKSSL KNVEASGILA ALPEPSGGNS YLNHVFHHKP ASVLSTSVSS
101: TASSSSSSGE RLPFTSSGGK FPQSAPVRVP SAMMNRHKKE FKLTDVVDVD DDDEGEMLPP HEMVARSLAQ SSLLSCSVLE GAGRTLKGRD LRQVRNAVFR
201: RTGFID
101: TASSSSSSGE RLPFTSSGGK FPQSAPVRVP SAMMNRHKKE FKLTDVVDVD DDDEGEMLPP HEMVARSLAQ SSLLSCSVLE GAGRTLKGRD LRQVRNAVFR
201: RTGFID
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.