Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79115 | Canola | nucleus | 96.05 | 95.42 |
| CDX98721 | Canola | nucleus | 88.16 | 85.35 |
| CDX94069 | Canola | nucleus | 86.84 | 84.08 |
| AT4G21970.1 | Thale cress | nucleus | 82.24 | 79.62 |
| CDY29096 | Canola | nucleus | 58.55 | 59.33 |
| CDX94568 | Canola | nucleus | 58.55 | 59.33 |
| CDY16655 | Canola | nucleus | 60.53 | 55.09 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 35.53 | 54.55 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 43.42 | 48.89 |
| KRH20851 | Soybean | nucleus | 48.68 | 45.4 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 49.34 | 39.47 |
| PGSC0003DMT400042495 | Potato | nucleus | 38.82 | 38.56 |
| KRH02067 | Soybean | nucleus | 46.05 | 37.84 |
| KRH51093 | Soybean | nucleus | 46.71 | 37.57 |
| Solyc02g080580.1.1 | Tomato | nucleus | 38.16 | 37.42 |
| CDY46674 | Canola | nucleus | 34.21 | 34.67 |
| CDX92790 | Canola | nucleus | 33.55 | 34.23 |
| CDX77180 | Canola | nucleus | 31.58 | 29.09 |
| CDY62461 | Canola | nucleus | 29.61 | 28.48 |
| CDY65979 | Canola | nucleus | 29.61 | 28.3 |
| CDY11244 | Canola | cytosol | 30.26 | 25.84 |
| CDX80857 | Canola | cytosol | 30.26 | 25.7 |
| CDX70321 | Canola | nucleus | 28.95 | 25.0 |
| CDY10396 | Canola | nucleus | 28.95 | 25.0 |
| CDX79110 | Canola | nucleus | 27.63 | 24.28 |
| CDX82885 | Canola | nucleus | 26.97 | 23.7 |
| CDY32323 | Canola | nucleus | 29.61 | 21.74 |
| CDY12918 | Canola | cytosol | 28.29 | 21.72 |
| CDX97979 | Canola | mitochondrion | 28.95 | 21.57 |
| CDY49797 | Canola | mitochondrion | 28.95 | 21.46 |
| CDY34631 | Canola | nucleus | 28.29 | 21.39 |
| CDX97628 | Canola | nucleus | 30.26 | 21.3 |
| CDY19509 | Canola | cytosol | 27.63 | 21.21 |
| CDY68595 | Canola | nucleus | 29.61 | 20.83 |
| CDY20098 | Canola | nucleus | 27.63 | 20.39 |
| CDX82452 | Canola | nucleus | 28.29 | 19.11 |
| CDX75803 | Canola | nucleus | 28.29 | 18.22 |
Protein Annotations
| EnsemblPlants:CDX82889 | EnsemblPlantsGene:GSBRNA2T00138261001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 | PFAM:PF04520 |
| ProteinID:CDX82889 | ProteinID:CDX82889.1 | SEG:seg | UniParc:UPI0004EF08B4 | MapMan:35.2 | : |
Description
BnaC01g13390D
Coordinates
chrLK031830:+:1117406..1117864
Molecular Weight (calculated)
16864.6 Da
IEP (calculated)
5.661
GRAVY (calculated)
-0.817
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAEEFQEE EVWSVLRENE TPGPEMKMSK SNNIFSAASS SSARYIPKGK VSKAKQSSAP MNVPDWSKIY GNTRSNHLHS WTTHDEDDDD DSVVPPHELV
101: AKMLARTQIS SFSMCEGIGR TLKGRDLSKT RNDVLTKTGF LESNVTSTSP QP
101: AKMLARTQIS SFSMCEGIGR TLKGRDLSKT RNDVLTKTGF LESNVTSTSP QP
001: MEGGEEFQEE EVWSVLRESE TQGPEMKMSK SNNLFSASSS SSARYIPKGN EVSGGAKQSS APMNIPDWSK VYGYSKKNTS SHLHSWAIDD DDEGSMVPPH
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
Arabidopsis Description
Protein of unknown function, DUF584 [Source:TAIR;Acc:AT4G21970]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.