Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 52.11 | 100.0 |
| VIT_06s0080g00750.t01 | Wine grape | cytosol | 16.32 | 62.0 |
| KRH20851 | Soybean | nucleus | 53.16 | 61.96 |
| KRH51093 | Soybean | nucleus | 56.84 | 57.14 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 40.0 | 56.3 |
| KRH02067 | Soybean | nucleus | 52.11 | 53.51 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 46.84 | 52.98 |
| Bra029510.1-P | Field mustard | nucleus | 40.53 | 51.68 |
| CDY16655 | Canola | nucleus | 44.21 | 50.3 |
| CDX94568 | Canola | nucleus | 39.47 | 50.0 |
| CDY29096 | Canola | nucleus | 39.47 | 50.0 |
| Bra019408.1-P | Field mustard | nucleus | 41.05 | 49.68 |
| CDX94069 | Canola | nucleus | 41.05 | 49.68 |
| CDX98721 | Canola | nucleus | 41.05 | 49.68 |
| CDX82889 | Canola | nucleus | 39.47 | 49.34 |
| AT4G21970.1 | Thale cress | nucleus | 39.47 | 47.77 |
| CDX79115 | Canola | nucleus | 38.42 | 47.71 |
| Bra013577.1-P | Field mustard | nucleus | 38.42 | 47.71 |
| PGSC0003DMT400042495 | Potato | nucleus | 37.37 | 46.41 |
| Solyc02g080580.1.1 | Tomato | nucleus | 36.84 | 45.16 |
| VIT_19s0090g00510.t01 | Wine grape | plastid | 47.89 | 39.22 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 31.58 | 35.93 |
| VIT_08s0040g01860.t01 | Wine grape | cytosol | 27.89 | 32.32 |
| VIT_10s0116g01810.t01 | Wine grape | mitochondrion, nucleus | 30.53 | 30.05 |
| VIT_16s0098g01240.t01 | Wine grape | nucleus | 30.0 | 27.67 |
| VIT_10s0116g01820.t01 | Wine grape | mitochondrion, nucleus | 30.53 | 27.23 |
| VIT_08s0007g02950.t01 | Wine grape | nucleus | 31.05 | 27.06 |
Protein Annotations
| ArrayExpress:VIT_10s0116g01720 | EMBL:FN595248 | EMBL:FN595325 | EnsemblPlants:VIT_10s0116g01720.t01 | EnsemblPlantsGene:VIT_10s0116g01720 | EntrezGene:100854465 |
| EntrezGene:LOC100854465 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 | PFAM:PF04520 | ProteinID:CBI23543 |
| ProteinID:CBI23543.3 | ProteinID:CCB48214 | ProteinID:CCB48214.1 | RefSeq:XP_003632958 | RefSeq:XP_003632958.1 | SEG:seg |
| UniParc:UPI00019841DB | UniProt:F6H7L9 | wikigene:100854465 | wikigene:LOC100854465 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr10:-:974676..975250
Molecular Weight (calculated)
20805.8 Da
IEP (calculated)
5.327
GRAVY (calculated)
-0.811
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRHAAIGN SSGGGGRSMR DEDFDEEDVW AVVKDREDSS PIMRKSKDYS SGSSSSSSSS AWRLPTAPRG IRRGNNTPSH EAKLVQHSSA PMNIPDWSKI
101: YRKNSRAMPW VDGVEDVNDA GNTHQICVVD DDDDDDGDDD IVPPHEWIAR KLASSQISSF SVCEGVGRTL KGRDLSKVRN AVLTKTGFLE
101: YRKNSRAMPW VDGVEDVNDA GNTHQICVVD DDDDDDGDDD IVPPHEWIAR KLASSQISSF SVCEGVGRTL KGRDLSKVRN AVLTKTGFLE
001: MDSLGSRRRT HNSRRVPSMG IEGDEEFQEE DVWSVLREGE TSSPEMKIPK SHFSSSSSSS SSPWNIRRSK EVSGVKQSSA PMNVPDWSKV YGDSKSNRRS
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q8LFI5]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.