Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 55.49 | 54.49 |
| Solyc09g007790.1.1 | Tomato | cytosol | 50.61 | 52.53 |
| PGSC0003DMT400055482 | Potato | cytosol | 51.22 | 52.5 |
| VIT_06s0080g00750.t01 | Wine grape | cytosol | 15.24 | 50.0 |
| PGSC0003DMT400045373 | Potato | cytosol | 43.29 | 48.3 |
| GSMUA_Achr11P... | Banana | mitochondrion | 39.63 | 45.45 |
| KRG95986 | Soybean | nucleus | 40.85 | 44.08 |
| Solyc10g086110.1.1 | Tomato | cytosol | 42.07 | 43.67 |
| KRH19865 | Soybean | mitochondrion | 46.34 | 42.22 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 41.46 | 41.98 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 25.0 | 41.41 |
| KRH67690 | Soybean | cytosol | 41.46 | 40.96 |
| KRH32477 | Soybean | cytosol | 46.95 | 40.96 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 40.85 | 40.85 |
| Os04t0520700-01 | Rice | mitochondrion | 41.46 | 39.08 |
| Os02t0629000-01 | Rice | mitochondrion | 35.98 | 34.71 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 37.2 | 34.27 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 38.41 | 34.24 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 36.59 | 33.9 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 36.59 | 33.9 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 36.59 | 33.52 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 36.59 | 33.15 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 36.59 | 33.15 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 36.59 | 33.15 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 35.98 | 33.15 |
| KXG26730 | Sorghum | mitochondrion | 38.41 | 32.98 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 34.15 | 32.37 |
| Zm00001d025872_P001 | Maize | mitochondrion | 35.37 | 32.22 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 33.54 | 31.79 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 34.15 | 31.46 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 34.15 | 31.28 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 33.54 | 31.25 |
| EER91475 | Sorghum | mitochondrion | 35.37 | 30.53 |
| Zm00001d017287_P001 | Maize | cytosol | 31.1 | 30.0 |
| VIT_10s0116g01810.t01 | Wine grape | mitochondrion, nucleus | 34.15 | 29.02 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 32.32 | 27.89 |
| VIT_10s0116g01820.t01 | Wine grape | mitochondrion, nucleus | 34.15 | 26.29 |
| VIT_16s0098g01240.t01 | Wine grape | nucleus | 31.1 | 24.76 |
| VIT_08s0007g02950.t01 | Wine grape | nucleus | 31.71 | 23.85 |
| VIT_19s0090g00510.t01 | Wine grape | plastid | 31.1 | 21.98 |
| Os10t0481000-00 | Rice | mitochondrion | 24.39 | 13.38 |
Protein Annotations
| EntrezGene:100258555 | wikigene:100258555 | MapMan:35.2 | EMBL:AM478873 | ProteinID:CAN66257 | ProteinID:CAN66257.1 |
| ProteinID:CCB57073 | ProteinID:CCB57073.1 | UniProt:F6HR24 | EMBL:FN596008 | EntrezGene:LOC100258555 | wikigene:LOC100258555 |
| PFAM:PF04520 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | InterPro:Senescence_reg_S40 | UniParc:UPI0002108E65 | ArrayExpress:VIT_08s0040g01860 |
| EnsemblPlantsGene:VIT_08s0040g01860 | EnsemblPlants:VIT_08s0040g01860.t01 | RefSeq:XP_002281329 | RefSeq:XP_002281329.1 | RefSeq:XP_003632611 | RefSeq:XP_003632611.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:12964958..12966323
Molecular Weight (calculated)
18614.6 Da
IEP (calculated)
6.287
GRAVY (calculated)
-0.897
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRRSYLTR PSYVYLAGEK SSSNNEEITD DIGLEFDESE VWNSGQVPSS DPFKKPIPSS RASKKPVSKK MGSVTATSLP VNIPDWSKIL RDDYRLSQRK
101: ESDEDVDDVE EDDDHDSRIP PHEYLARTRV ASFSVHEGIG RTLKGRDLSR VRNAIWKKAI PYVN
101: ESDEDVDDVE EDDDHDSRIP PHEYLARTRV ASFSVHEGIG RTLKGRDLSR VRNAIWKKAI PYVN
001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.