Factsheet for Zm00001d014007_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d015521_P001
Zm00001d017475_P002
Zm00001d017793_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT3G45210.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT3G45210.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G03230.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G03230.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G03230.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G03230.1	Zm00001d044479_P001	AT2G42580.1	19000166
AT5G03230.1	Zm00001d015521_P001	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91475	Sorghum	mitochondrion	89.39	84.21
HORVU1Hr1G041890.1	Barley	mitochondrion	61.45	61.45
TraesCS1A01G157900.1	Wheat	mitochondrion	62.01	61.33
TraesCS1D01G155400.1	Wheat	mitochondrion	61.45	60.77
TraesCS1B01G174100.1	Wheat	mitochondrion	60.34	59.67
GSMUA_Achr11P...	Banana	mitochondrion	36.87	46.15
GSMUA_Achr8P18920_001	Banana	cytosol, mitochondrion	38.55	42.59
Solyc06g075170.1.1	Tomato	nucleus	36.87	40.49
Zm00001d025070_P001	Maize	cytosol, plastid	24.58	40.0
KRH22888	Soybean	cytosol, mitochondrion, nucleus	34.08	39.61
VIT_06s0004g02830.t01	Wine grape	cytosol	36.31	38.92
Zm00001d025872_P001	Maize	mitochondrion	38.55	38.33
KRH26408	Soybean	cytosol	31.84	38.26
PGSC0003DMT400062500	Potato	nucleus	36.31	38.01
PGSC0003DMT400020798	Potato	plastid	35.75	37.65
PGSC0003DMT400045373	Potato	cytosol	30.73	37.41
CDY62461	Canola	nucleus	32.96	37.34
AT2G28400.1	Thale cress	mitochondrion	33.52	37.04
Solyc11g069450.1.1	Tomato	cytosol	35.75	36.99
KRG95986	Soybean	nucleus	31.28	36.84
Zm00001d051400_P001	Maize	mitochondrion	25.14	36.59
Zm00001d048508_P001	Maize	mitochondrion	34.64	36.26
Zm00001d023440_P001	Maize	cytosol, peroxisome, plastid	34.08	36.09
Zm00001d003009_P001	Maize	mitochondrion, nucleus	36.87	35.87
CDX77180	Canola	nucleus	32.96	35.76
KRH67690	Soybean	cytosol	32.96	35.54
AT5G03230.1	Thale cress	nucleus	32.96	35.54
CDY65979	Canola	nucleus	31.28	35.22
Bra002459.1-P	Field mustard	nucleus	31.28	35.0
PGSC0003DMT400055482	Potato	cytosol	31.28	35.0
KRH25013	Soybean	mitochondrion	32.96	34.71
AT3G45210.1	Thale cress	nucleus	28.49	34.46
AT5G60680.1	Thale cress	nucleus	31.28	34.36
Bra020237.1-P	Field mustard	nucleus	31.84	34.34
Solyc09g007790.1.1	Tomato	cytosol	30.17	34.18
VIT_08s0040g01860.t01	Wine grape	cytosol	31.28	34.15
CDY10396	Canola	nucleus	33.52	34.09
CDX70321	Canola	nucleus	33.52	34.09
KRH19865	Soybean	mitochondrion	34.08	33.89
Solyc10g086110.1.1	Tomato	cytosol	29.61	33.54
Bra009543.1-P	Field mustard	nucleus	32.96	33.52
KRH29916	Soybean	mitochondrion	31.84	33.33
KRH32477	Soybean	cytosol	34.08	32.45
Zm00001d017287_P001	Maize	cytosol	29.61	31.18
CDY11244	Canola	cytosol	30.73	30.9
Bra005738.1-P	Field mustard	cytosol	30.73	30.9
Zm00001d042760_P001	Maize	nucleus	36.31	30.81
CDX80857	Canola	cytosol	30.73	30.73
Zm00001d002798_P001	Maize	mitochondrion	34.08	29.19
Zm00001d021627_P001	Maize	mitochondrion	29.61	28.19
Zm00001d006489_P001	Maize	mitochondrion	30.17	28.12
Zm00001d025967_P001	Maize	nucleus	32.96	27.96
Os10t0481000-00	Rice	mitochondrion	43.58	26.09
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	32.4	23.39
Bra035703.1-P	Field mustard	cytosol	31.28	22.76
Zm00001d032976_P001	Maize	mitochondrion, nucleus	29.05	20.55

Protein Annotations

EnsemblPlants:Zm00001d014007_P001	EnsemblPlants:Zm00001d014007_T001	EnsemblPlantsGene:Zm00001d014007	EntrezGene:100277341	InterPro:Senescence_reg_S40	PANTHER:PTHR33083
PANTHER:PTHR33083:SF9	PFAM:PF04520	ProteinID:AQK65036.1	SEG:seg	UniParc:UPI000220F8E7	UniProt:A0A1D6GPD7
MapMan:35.2	:	:	:	:	:

Description

senescence regulator

Coordinates

chr5:+:28477643..28478182

Molecular Weight (calculated)

18513.4 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.429

Length

179 amino acids

Sequence
(BLAST)

001: MAGRSSLSMV ASHRLFTPVN PVGGADHGVE LDEADVIWGG GGGYPASSSP SSSPFLSSAV DPYARSPPVA APSKQKPRGV GAGAPGPASV PVNIPDWSKI
101: LGAEYAGSGW AAHDDRADDD AAAFGGAGGR RWVPPHEVLQ GRERAAASFS VREGAGRTLK GRDLRRVRNA IWEKTGFQD

Best Arabidopsis Sequence Match ( AT5G03230.1 )
(BLAST)

001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD

Arabidopsis Description

Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.