Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70321 | Canola | nucleus | 82.53 | 77.84 |
| Bra005738.1-P | Field mustard | cytosol | 83.13 | 77.53 |
| Bra009543.1-P | Field mustard | nucleus | 81.93 | 77.27 |
| CDY11244 | Canola | cytosol | 82.53 | 76.97 |
| CDY10396 | Canola | nucleus | 81.33 | 76.7 |
| CDX80857 | Canola | cytosol | 82.53 | 76.54 |
| AT5G60680.1 | Thale cress | nucleus | 43.37 | 44.17 |
| GSMUA_Achr11P... | Banana | mitochondrion | 36.14 | 41.96 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 39.16 | 40.12 |
| AT3G45210.1 | Thale cress | nucleus | 34.94 | 39.19 |
| Os04t0520700-01 | Rice | mitochondrion | 37.95 | 36.21 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 34.94 | 35.37 |
| Os02t0629000-01 | Rice | mitochondrion | 36.14 | 35.29 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 37.35 | 34.83 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 38.55 | 34.78 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 37.35 | 34.64 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 36.75 | 34.27 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 36.14 | 33.9 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 36.75 | 33.7 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 36.75 | 33.7 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 36.75 | 33.7 |
| KXG26730 | Sorghum | mitochondrion | 37.95 | 32.98 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 35.54 | 32.96 |
| EER91475 | Sorghum | mitochondrion | 37.35 | 32.63 |
| Zm00001d025872_P001 | Maize | mitochondrion | 34.94 | 32.22 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 34.34 | 32.2 |
| Zm00001d017287_P001 | Maize | cytosol | 31.93 | 31.18 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 32.53 | 30.68 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 31.93 | 30.64 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 32.53 | 30.34 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 31.33 | 30.06 |
| AT2G28400.1 | Thale cress | mitochondrion | 28.31 | 29.01 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 28.92 | 28.57 |
| AT4G21970.1 | Thale cress | nucleus | 26.51 | 28.03 |
| AT1G11700.1 | Thale cress | nucleus | 31.33 | 25.87 |
| AT1G61930.1 | Thale cress | cytosol | 31.33 | 25.62 |
| AT4G21930.1 | Thale cress | cytosol | 27.71 | 25.14 |
| AT4G26950.1 | Thale cress | nucleus | 21.08 | 24.31 |
| AT3G15040.1 | Thale cress | nucleus | 27.11 | 18.52 |
| Os10t0481000-00 | Rice | mitochondrion | 26.51 | 14.72 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831900 | ProteinID:AED90573.1 | EMBL:AF370275 | ArrayExpress:AT5G03230 | EnsemblPlantsGene:AT5G03230 |
| RefSeq:AT5G03230 | TAIR:AT5G03230 | RefSeq:AT5G03230-TAIR-G | EnsemblPlants:AT5G03230.1 | TAIR:AT5G03230.1 | EMBL:AY142539 |
| ProteinID:BAB08383.1 | ProteinID:CAB86090.1 | RefSeq:NP_195943.1 | PFAM:PF04520 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | UniProt:Q9LYW2 |
| InterPro:Senescence_reg_S40 | UniParc:UPI00000AC739 | SEG:seg | : | : | : |
Description
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
Coordinates
chr5:+:769438..770563
Molecular Weight (calculated)
19005.0 Da
IEP (calculated)
6.036
GRAVY (calculated)
-1.104
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.