Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P | |
| Bra023972.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03230.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT5G03230.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
| AT5G03230.1 | Bra023972.1-P | AT4G31920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70321 | Canola | nucleus | 98.3 | 98.3 |
| CDY10396 | Canola | nucleus | 96.59 | 96.59 |
| Bra005738.1-P | Field mustard | cytosol | 83.52 | 82.58 |
| AT5G03230.1 | Thale cress | nucleus | 77.27 | 81.93 |
| Bra002459.1-P | Field mustard | nucleus | 39.2 | 43.12 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 39.2 | 42.59 |
| Bra020237.1-P | Field mustard | nucleus | 39.2 | 41.57 |
| GSMUA_Achr11P... | Banana | mitochondrion | 32.95 | 40.56 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 32.39 | 34.76 |
| Os04t0520700-01 | Rice | mitochondrion | 34.09 | 34.48 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 35.8 | 34.24 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 34.66 | 34.08 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 34.09 | 33.15 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 34.09 | 33.15 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 34.09 | 33.15 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 33.52 | 32.96 |
| Os02t0629000-01 | Rice | mitochondrion | 31.82 | 32.94 |
| EER91475 | Sorghum | mitochondrion | 34.66 | 32.11 |
| KXG26730 | Sorghum | mitochondrion | 34.66 | 31.94 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 31.82 | 31.46 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 31.82 | 31.46 |
| Bra019408.1-P | Field mustard | nucleus | 27.84 | 31.21 |
| Zm00001d025872_P001 | Maize | mitochondrion | 31.82 | 31.11 |
| Bra029510.1-P | Field mustard | nucleus | 26.14 | 30.87 |
| Zm00001d017287_P001 | Maize | cytosol | 29.55 | 30.59 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 30.68 | 30.51 |
| Bra013577.1-P | Field mustard | nucleus | 25.57 | 29.41 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 28.98 | 28.98 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 28.41 | 28.9 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 28.41 | 28.9 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 28.98 | 28.81 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 28.98 | 28.65 |
| Bra019837.1-P | Field mustard | mitochondrion | 27.27 | 23.41 |
| Bra027071.1-P | Field mustard | cytosol | 26.14 | 23.23 |
| Bra019080.1-P | Field mustard | nucleus | 19.89 | 23.18 |
| Bra013574.1-P | Field mustard | cytosol | 22.73 | 23.12 |
| Bra027283.1-P | Field mustard | nucleus | 27.84 | 22.79 |
| Bra001580.1-P | Field mustard | nucleus | 26.14 | 20.44 |
| Bra021587.1-P | Field mustard | nucleus | 25.0 | 20.0 |
| Bra035703.1-P | Field mustard | cytosol | 25.0 | 17.89 |
| Os10t0481000-00 | Rice | mitochondrion | 26.7 | 15.72 |
Protein Annotations
| EnsemblPlants:Bra009543.1 | EnsemblPlants:Bra009543.1-P | EnsemblPlantsGene:Bra009543 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI0002547C25 | UniProt:M4CZ96 | MapMan:35.2 | : |
Description
AT5G03230 (E=3e-057) | unknown protein
Coordinates
chrA10:-:17166256..17166786
Molecular Weight (calculated)
20045.3 Da
IEP (calculated)
6.640
GRAVY (calculated)
-0.997
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMKHFFAK PKHTYPQPEP VMSENDKNVF EFEESDIHNL GDHQKPSSFE AKRSISISRL RRKPAKVADS SGFDNRKTAK TGSVPVNIPD WSKILKSEYR
101: SHVVIPDYDS DEDDEDDEEI NDGDTTGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRLLRNAIWE KIGFQD
101: SHVVIPDYDS DEDDEDDEEI NDGDTTGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRLLRNAIWE KIGFQD
001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
Arabidopsis Description
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.