Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98721 | Canola | nucleus | 100.0 | 100.0 |
| CDX94069 | Canola | nucleus | 98.73 | 98.73 |
| Bra013577.1-P | Field mustard | nucleus | 85.99 | 88.24 |
| AT4G21970.1 | Thale cress | nucleus | 84.71 | 84.71 |
| Bra029510.1-P | Field mustard | nucleus | 59.24 | 62.42 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 34.39 | 54.55 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 41.4 | 48.15 |
| KRH20851 | Soybean | nucleus | 48.41 | 46.63 |
| PGSC0003DMT400042495 | Potato | nucleus | 40.13 | 41.18 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 49.68 | 41.05 |
| KRH51093 | Soybean | nucleus | 48.41 | 40.21 |
| Solyc02g080580.1.1 | Tomato | nucleus | 39.49 | 40.0 |
| KRH02067 | Soybean | nucleus | 47.13 | 40.0 |
| Bra019080.1-P | Field mustard | nucleus | 34.39 | 35.76 |
| Bra002459.1-P | Field mustard | nucleus | 30.57 | 30.0 |
| Bra020237.1-P | Field mustard | nucleus | 30.57 | 28.92 |
| Bra009543.1-P | Field mustard | nucleus | 31.21 | 27.84 |
| Bra005738.1-P | Field mustard | cytosol | 30.57 | 26.97 |
| Bra013574.1-P | Field mustard | cytosol | 28.66 | 26.01 |
| Bra027283.1-P | Field mustard | nucleus | 31.85 | 23.26 |
| Bra027071.1-P | Field mustard | cytosol | 29.3 | 23.23 |
| Bra019837.1-P | Field mustard | mitochondrion | 29.94 | 22.93 |
| Bra021587.1-P | Field mustard | nucleus | 31.21 | 22.27 |
| Bra001580.1-P | Field mustard | nucleus | 28.66 | 20.0 |
| Bra035703.1-P | Field mustard | cytosol | 29.3 | 18.7 |
Protein Annotations
| EnsemblPlants:Bra019408.1 | EnsemblPlants:Bra019408.1-P | EnsemblPlantsGene:Bra019408 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI0002540D1D | UniProt:M4DSB5 | MapMan:35.2 | : |
Description
AT4G21970 (E=1e-062) | unknown protein
Coordinates
chrA03:+:24353976..24354449
Molecular Weight (calculated)
17380.1 Da
IEP (calculated)
6.962
GRAVY (calculated)
-0.876
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGEEFQEE DVWSVLREKE TQGPQMRISK SSNLFSAASS SSARYIPKGK EVSGEKQSSA PMNVPDWSKI YGNTKKSTRS NHLHSWATHD EDDDEDSMVP
101: PHELVAKRLA RTQISSFSMC EGIGRTLKGR DLSKTRNAVL TKTGFLESNV TSTSSPP
101: PHELVAKRLA RTQISSFSMC EGIGRTLKGR DLSKTRNAVL TKTGFLESNV TSTSSPP
001: MEGGEEFQEE EVWSVLRESE TQGPEMKMSK SNNLFSASSS SSARYIPKGN EVSGGAKQSS APMNIPDWSK VYGYSKKNTS SHLHSWAIDD DDEGSMVPPH
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
101: ELVAKRLART QISSFSMCEG IGRTLKGRDL SKTRNAVLTR TGFLESNITS SSTTSPP
Arabidopsis Description
Protein of unknown function, DUF584 [Source:TAIR;Acc:AT4G21970]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.