Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16655 | Canola | nucleus | 96.64 | 86.23 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 78.52 | 69.64 |
| Bra019408.1-P | Field mustard | nucleus | 62.42 | 59.24 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 38.93 | 58.59 |
| Bra013577.1-P | Field mustard | nucleus | 59.73 | 58.17 |
| KRH20851 | Soybean | nucleus | 52.35 | 47.85 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 41.61 | 45.93 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 51.68 | 40.53 |
| KRH51093 | Soybean | nucleus | 48.32 | 38.1 |
| PGSC0003DMT400042495 | Potato | nucleus | 38.26 | 37.25 |
| KRH02067 | Soybean | nucleus | 45.64 | 36.76 |
| Solyc02g080580.1.1 | Tomato | nucleus | 36.91 | 35.48 |
| Bra019080.1-P | Field mustard | nucleus | 32.89 | 32.45 |
| Bra020237.1-P | Field mustard | nucleus | 31.54 | 28.31 |
| Bra002459.1-P | Field mustard | nucleus | 30.2 | 28.12 |
| Bra009543.1-P | Field mustard | nucleus | 30.87 | 26.14 |
| Bra013574.1-P | Field mustard | cytosol | 30.2 | 26.01 |
| Bra005738.1-P | Field mustard | cytosol | 30.2 | 25.28 |
| Bra027071.1-P | Field mustard | cytosol | 32.21 | 24.24 |
| Bra027283.1-P | Field mustard | nucleus | 33.56 | 23.26 |
| Bra021587.1-P | Field mustard | nucleus | 34.23 | 23.18 |
| Bra019837.1-P | Field mustard | mitochondrion | 28.86 | 20.98 |
| Bra001580.1-P | Field mustard | nucleus | 31.54 | 20.89 |
| Bra035703.1-P | Field mustard | cytosol | 28.86 | 17.48 |
Protein Annotations
| EnsemblPlants:Bra029510.1 | EnsemblPlants:Bra029510.1-P | EnsemblPlantsGene:Bra029510 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI0002542697 | UniProt:M4EL43 | MapMan:35.2 | : |
Description
AT4G04630 (E=7e-057) | unknown protein
Coordinates
chrA09:+:17457719..17458168
Molecular Weight (calculated)
16779.5 Da
IEP (calculated)
7.216
GRAVY (calculated)
-0.888
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLDGEDEFQ EDIWSVLREA KTSGHETKIP KSHFSSPSSS TSFTSSPWNI HRSKDVSGEK QSSAPMNVPD WSKIYGNARS KERSIHNLHS HDEDDDDGCM
101: VPPHEWVARK LAKTQISSFS MCEGVGRTLK GRDLSKMRNA VLTKTGFLE
101: VPPHEWVARK LAKTQISSFS MCEGVGRTLK GRDLSKMRNA VLTKTGFLE
001: MDSLGSRRRT HNSRRVPSMG IEGDEEFQEE DVWSVLREGE TSSPEMKIPK SHFSSSSSSS SSPWNIRRSK EVSGVKQSSA PMNVPDWSKV YGDSKSNRRS
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q8LFI5]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.