Factsheet for Bra035703.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62461	Canola	nucleus	59.35	92.41
CDX77180	Canola	nucleus	58.54	87.27
AT2G28400.1	Thale cress	mitochondrion	48.78	74.07
KRH22888	Soybean	cytosol, mitochondrion, nucleus	23.58	37.66
Bra002459.1-P	Field mustard	nucleus	24.39	37.5
KRH26408	Soybean	cytosol	22.36	36.91
Bra020237.1-P	Field mustard	nucleus	24.8	36.75
Solyc06g075170.1.1	Tomato	nucleus	23.58	35.58
PGSC0003DMT400020798	Potato	plastid	24.39	35.29
Solyc11g069450.1.1	Tomato	cytosol	24.39	34.68
GSMUA_Achr11P...	Banana	mitochondrion	19.51	33.57
PGSC0003DMT400062500	Potato	nucleus	23.17	33.33
TraesCS1B01G174100.1	Wheat	mitochondrion	23.17	31.49
TraesCS1D01G155400.1	Wheat	mitochondrion	23.17	31.49
Zm00001d014007_P001	Maize	cytosol, plastid	22.76	31.28
HORVU1Hr1G041890.1	Barley	mitochondrion	22.76	31.28
TraesCS1A01G157900.1	Wheat	mitochondrion	22.76	30.94
Os04t0520700-01	Rice	mitochondrion	21.54	30.46
Bra013577.1-P	Field mustard	nucleus	18.7	30.07
Zm00001d025872_P001	Maize	mitochondrion	21.95	30.0
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	19.92	29.88
GSMUA_Achr8P18920_001	Banana	cytosol, mitochondrion	19.51	29.63
TraesCS2D01G376300.1	Wheat	mitochondrion	21.14	29.38
Bra019408.1-P	Field mustard	nucleus	18.7	29.3
TraesCS2B01G397000.1	Wheat	mitochondrion	21.14	29.21
TraesCS2A01G380100.1	Wheat	mitochondrion	21.14	29.21
Bra029510.1-P	Field mustard	nucleus	17.48	28.86
EER91475	Sorghum	mitochondrion	21.95	28.42
Zm00001d003009_P001	Maize	mitochondrion, nucleus	21.14	28.26
HORVU0Hr1G005210.2	Barley	cytosol, plastid	20.33	28.25
Os02t0629000-01	Rice	mitochondrion	19.11	27.65
KXG26730	Sorghum	mitochondrion	20.73	26.7
Zm00001d017287_P001	Maize	cytosol	18.29	26.47
HORVU0Hr1G016350.1	Barley	cytosol, mitochondrion, nucleus, plastid	18.7	25.84
TraesCS6D01G212800.1	Wheat	cytosol	17.89	25.43
Bra009543.1-P	Field mustard	nucleus	17.89	25.0
TraesCS6A01G222200.1	Wheat	cytosol	17.89	25.0
Bra013574.1-P	Field mustard	cytosol	17.48	24.86
Bra005738.1-P	Field mustard	cytosol	17.89	24.72
Bra019080.1-P	Field mustard	nucleus	15.04	24.5
TraesCS6B01G258900.1	Wheat	nucleus	17.07	24.28
Bra027283.1-P	Field mustard	nucleus	19.51	22.33
Bra027071.1-P	Field mustard	cytosol	17.48	21.72
Bra019837.1-P	Field mustard	mitochondrion	17.48	20.98
Bra001580.1-P	Field mustard	nucleus	19.11	20.89
Bra021587.1-P	Field mustard	nucleus	17.89	20.0
Os10t0481000-00	Rice	mitochondrion	16.67	13.71

Protein Annotations

EnsemblPlants:Bra035703.1	EnsemblPlants:Bra035703.1-P	EnsemblPlantsGene:Bra035703	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650
InterPro:P-loop_NTPase	InterPro:Senescence_reg_S40	PANTHER:PTHR24031	PANTHER:PTHR24031:SF551	PFAM:PF00271	PFAM:PF04520
PFscan:PS51194	SUPFAM:SSF52540	UniParc:UPI0002543E3F	UniProt:M4F3Q3	MapMan:35.1	:

Description

AT2G28400 (E=2e-058) | unknown protein

Coordinates

chrA04:-:12693312..12695475

Molecular Weight (calculated)

27328.7 Da

IEP (calculated)

4.995

GRAVY (calculated)

-0.604

Length

246 amino acids

Sequence
(BLAST)

001: MATSKCYYPR PSHRFFSTDH QHVSSPSDFE LDEWDLFNTG SDSASGFTFS DLTITSDRTG ANRKPRGGSA ASSLPVNVPD WSKILGEESP RRQTSYDGDE
101: VAACGGETRR VPPHELIASR RMASFSVHEG AGRTLKGRDL SRPAAVQQQL KPQPRLGGEG EETFYTTYAE VCDSFDAMEL RSDLLRGIYA YTTRGNMDQN
201: TRDIIMQEFC SGYSRVPITT DLLAHGIDVQ QVSLVINFEL PTQLEN

Best Arabidopsis Sequence Match ( AT2G28400.1 )
(BLAST)

001: MATSKCYYPR PSHRFFTTDQ HVTATSDFEL DEWDLFNTGS DSSSSFSFSD LTITSGRTGT NRQIHGGSDS GKAASSLPVN VPDWSKILGD ESRRQRKISN
101: EEEVDGDEIL CGEGTRRVPP HELLANRRMA SFSVHEGAGR TLKGRDLSRV RNTIFKIRGI ED

Arabidopsis Description

Uncharacterized protein At2g28400 [Source:UniProtKB/TrEMBL;Acc:Q9SKN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.