Factsheet for Bra002459.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018081.1-P
Bra025315.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	Bra025315.1-P	AT3G27960.1	21798944
AT3G45210.1	Bra018081.1-P	AT3G48150.1	21798944
AT3G45210.1	Bra033769.1-P	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65979	Canola	nucleus	96.88	97.48
Bra020237.1-P	Field mustard	nucleus	83.75	80.72
AT3G45210.1	Thale cress	nucleus	63.75	68.92
Solyc06g075170.1.1	Tomato	nucleus	58.75	57.67
PGSC0003DMT400020798	Potato	plastid	59.38	55.88
KRH22888	Soybean	cytosol, mitochondrion, nucleus	53.75	55.84
KRH26408	Soybean	cytosol	51.88	55.7
PGSC0003DMT400062500	Potato	nucleus	58.12	54.39
Solyc11g069450.1.1	Tomato	cytosol	58.75	54.34
GSMUA_Achr11P...	Banana	mitochondrion	40.0	44.76
GSMUA_Achr8P18920_001	Banana	cytosol, mitochondrion	40.0	39.51
Bra009543.1-P	Field mustard	nucleus	43.12	39.2
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	39.38	38.41
Bra005738.1-P	Field mustard	cytosol	41.88	37.64
Os04t0520700-01	Rice	mitochondrion	37.5	34.48
TraesCS2D01G376300.1	Wheat	mitochondrion	36.88	33.33
HORVU1Hr1G041890.1	Barley	mitochondrion	36.88	32.96
TraesCS1A01G157900.1	Wheat	mitochondrion	36.88	32.6
TraesCS1B01G174100.1	Wheat	mitochondrion	36.88	32.6
TraesCS1D01G155400.1	Wheat	mitochondrion	36.88	32.6
TraesCS2B01G397000.1	Wheat	mitochondrion	36.25	32.58
HORVU0Hr1G005210.2	Barley	cytosol, plastid	35.62	32.2
TraesCS2A01G380100.1	Wheat	mitochondrion	35.62	32.02
Zm00001d014007_P001	Maize	cytosol, plastid	35.0	31.28
Os02t0629000-01	Rice	mitochondrion	33.12	31.18
Zm00001d003009_P001	Maize	mitochondrion, nucleus	35.62	30.98
Bra019408.1-P	Field mustard	nucleus	30.0	30.57
Zm00001d025872_P001	Maize	mitochondrion	34.38	30.56
Bra029510.1-P	Field mustard	nucleus	28.12	30.2
Bra013577.1-P	Field mustard	nucleus	28.75	30.07
EER91475	Sorghum	mitochondrion	35.62	30.0
KXG26730	Sorghum	mitochondrion	35.62	29.84
Zm00001d017287_P001	Maize	cytosol	30.62	28.82
TraesCS6D01G212800.1	Wheat	cytosol	30.62	28.32
TraesCS6A01G222200.1	Wheat	cytosol	30.62	27.84
Bra013574.1-P	Field mustard	cytosol	30.0	27.75
HORVU0Hr1G016350.1	Barley	cytosol, mitochondrion, nucleus, plastid	30.62	27.53
TraesCS6B01G258900.1	Wheat	nucleus	29.38	27.17
Bra019080.1-P	Field mustard	nucleus	25.0	26.49
Bra027071.1-P	Field mustard	cytosol	31.88	25.76
Bra019837.1-P	Field mustard	mitochondrion	31.25	24.39
Bra035703.1-P	Field mustard	cytosol	37.5	24.39
Bra027283.1-P	Field mustard	nucleus	29.38	21.86
Bra001580.1-P	Field mustard	nucleus	28.75	20.44
Bra021587.1-P	Field mustard	nucleus	26.25	19.09
Os10t0481000-00	Rice	mitochondrion	26.25	14.05

Protein Annotations

EnsemblPlants:Bra002459.1	EnsemblPlants:Bra002459.1-P	EnsemblPlantsGene:Bra002459	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF9
PFAM:PF04520	SEG:seg	UniParc:UPI00025442B2	UniProt:M4CE28	MapMan:35.2	:

Description

AT5G60680 (E=6e-061) | unknown protein

Coordinates

chrA10:+:9416312..9416794

Molecular Weight (calculated)

17846.6 Da

IEP (calculated)

9.705

GRAVY (calculated)

-0.794

Length

160 amino acids

Sequence
(BLAST)

001: MATGKSYYAR PSHRFLGTDQ PYYAATDSGF EFDESDLYSA SDSPDFRRKI SKPVRSVKKS SNRPSTCGAS SAAAASSLPV NVPDWSKILR EEHRDNRRRS
101: IVDDDGDWLD ASGGRLPPHE FLAKTRMASF SVHEGVGRTL KGRDLSRVRN AIFEKIGFQD

Best Arabidopsis Sequence Match ( AT5G60680.1 )
(BLAST)

001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.