Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 3
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45210.1 | HORVU6Hr1G069310.1 | AT3G27960.1 | 21798944 |
| AT3G45210.1 | HORVU0Hr1G027080.4 | AT3G48150.1 | 21798944 |
| AT3G45210.1 | HORVU6Hr1G062870.1 | AT3G48150.1 | 21798944 |
| AT5G03230.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT5G03230.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT5G03230.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
| AT5G03230.1 | HORVU6Hr1G028680.1 | AT4G31920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G212800.1 | Wheat | cytosol | 90.45 | 93.06 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 91.01 | 92.05 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 88.2 | 90.75 |
| Os02t0629000-01 | Rice | mitochondrion | 65.73 | 68.82 |
| Zm00001d017287_P001 | Maize | cytosol | 56.74 | 59.41 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 51.12 | 51.41 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 41.57 | 45.12 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 37.08 | 42.86 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 37.08 | 39.52 |
| Solyc06g075170.1.1 | Tomato | nucleus | 33.71 | 36.81 |
| PGSC0003DMT400045373 | Potato | cytosol | 30.34 | 36.73 |
| PGSC0003DMT400062500 | Potato | nucleus | 34.83 | 36.26 |
| KRH26408 | Soybean | cytosol | 30.34 | 36.24 |
| KRH29916 | Soybean | mitochondrion | 33.71 | 35.09 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 34.83 | 34.64 |
| Solyc10g086110.1.1 | Tomato | cytosol | 30.34 | 34.18 |
| VIT_08s0040g01860.t01 | Wine grape | cytosol | 31.46 | 34.15 |
| KRH25013 | Soybean | mitochondrion | 32.58 | 34.12 |
| AT5G60680.1 | Thale cress | nucleus | 30.9 | 33.74 |
| Solyc09g007790.1.1 | Tomato | cytosol | 29.78 | 33.54 |
| PGSC0003DMT400020798 | Potato | plastid | 32.02 | 33.53 |
| Solyc11g069450.1.1 | Tomato | cytosol | 32.02 | 32.95 |
| KRH19865 | Soybean | mitochondrion | 33.15 | 32.78 |
| AT5G03230.1 | Thale cress | nucleus | 30.34 | 32.53 |
| AT2G28400.1 | Thale cress | mitochondrion | 29.21 | 32.1 |
| KRH67690 | Soybean | cytosol | 29.21 | 31.33 |
| PGSC0003DMT400055482 | Potato | cytosol | 28.09 | 31.25 |
| CDY62461 | Canola | nucleus | 27.53 | 31.01 |
| KRG95986 | Soybean | nucleus | 26.4 | 30.92 |
| CDY65979 | Canola | nucleus | 27.53 | 30.82 |
| Bra020237.1-P | Field mustard | nucleus | 28.65 | 30.72 |
| Bra002459.1-P | Field mustard | nucleus | 27.53 | 30.62 |
| CDX77180 | Canola | nucleus | 27.53 | 29.7 |
| CDX70321 | Canola | nucleus | 29.21 | 29.55 |
| CDY10396 | Canola | nucleus | 29.21 | 29.55 |
| KRH32477 | Soybean | cytosol | 30.9 | 29.26 |
| Bra005738.1-P | Field mustard | cytosol | 29.21 | 29.21 |
| CDY11244 | Canola | cytosol | 29.21 | 29.21 |
| AT3G45210.1 | Thale cress | nucleus | 24.16 | 29.05 |
| CDX80857 | Canola | cytosol | 29.21 | 29.05 |
| Bra009543.1-P | Field mustard | nucleus | 28.65 | 28.98 |
| HORVU0Hr1G038250.1 | Barley | cytosol | 24.16 | 27.39 |
| HORVU2Hr1G092750.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 26.4 | 23.38 |
| HORVU4Hr1G089030.1 | Barley | cytosol | 23.6 | 21.54 |
| HORVU3Hr1G083800.1 | Barley | nucleus | 25.28 | 20.93 |
| HORVU2Hr1G064730.1 | Barley | cytosol | 20.22 | 20.45 |
| Bra035703.1-P | Field mustard | cytosol | 25.84 | 18.7 |
| HORVU2Hr1G046550.2 | Barley | plastid | 19.1 | 16.43 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G016350.1 | EnsemblPlantsGene:HORVU0Hr1G016350 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF17 | PFAM:PF04520 |
| SEG:seg | UniParc:UPI000295D83A | UniProt:M0YLM2 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchrUn:+:87547690..87548909
Molecular Weight (calculated)
19180.4 Da
IEP (calculated)
6.128
GRAVY (calculated)
-0.581
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSTRSVAT ERAYNHFAPS STRGLMVMGY PATARGPVTA DEFDESDIWG SFNPAEEAEQ LARSGAELPR VRAVPSARPG RKAKPVDRTG GGGAAHGSLP
101: VAIPDWSKIL GDEYHGRQAG DWELDDADDE DIEGAPVVPP HELAWRRRAA SLSVNDGMGV GRMLKVRDAV WKKTGFQA
101: VAIPDWSKIL GDEYHGRQAG DWELDDADDE DIEGAPVVPP HELAWRRRAA SLSVNDGMGV GRMLKVRDAV WKKTGFQA
001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
Arabidopsis Description
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.