Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G302000.1 | Wheat | cytosol | 98.59 | 98.31 |
| TraesCS6A01G274500.1 | Wheat | cytosol | 98.45 | 98.31 |
| TraesCS6D01G254800.1 | Wheat | cytosol | 98.31 | 98.03 |
| Os02t0708400-01 | Rice | plasma membrane | 90.68 | 90.3 |
| EES05647 | Sorghum | cytosol | 90.11 | 89.48 |
| Zm00001d051589_P001 | Maize | cytosol | 88.84 | 88.22 |
| Zm00001d017793_P001 | Maize | cytosol | 87.15 | 86.54 |
| GSMUA_Achr10P... | Banana | cytosol | 70.48 | 75.61 |
| GSMUA_Achr2P09630_001 | Banana | nucleus | 67.51 | 66.85 |
| VIT_17s0000g08260.t01 | Wine grape | cytosol | 67.09 | 64.36 |
| Solyc03g114320.2.1 | Tomato | cytosol | 64.83 | 62.88 |
| PGSC0003DMT400062960 | Potato | cytosol | 64.83 | 62.88 |
| VIT_14s0066g01280.t01 | Wine grape | cytosol | 57.91 | 61.19 |
| KRH56614 | Soybean | cytosol | 59.6 | 60.11 |
| KRG93305 | Soybean | cytosol | 59.18 | 59.86 |
| KRH63534 | Soybean | nucleus | 61.3 | 59.78 |
| CDX86457 | Canola | cytosol | 54.52 | 58.13 |
| Bra025315.1-P | Field mustard | cytosol | 54.52 | 58.13 |
| CDY58518 | Canola | cytosol | 53.67 | 57.84 |
| AT3G27960.1 | Thale cress | cytosol | 53.95 | 57.62 |
| HORVU6Hr1G004990.1 | Barley | cytosol | 42.66 | 57.09 |
| KRH54405 | Soybean | cytosol | 60.31 | 56.71 |
| PGSC0003DMT400001405 | Potato | cytosol | 57.06 | 56.42 |
| Solyc02g086840.2.1 | Tomato | cytosol | 56.5 | 56.26 |
| AT1G27500.2 | Thale cress | cytosol | 52.26 | 55.98 |
| CDY27619 | Canola | nucleus | 51.27 | 55.08 |
| Bra032832.1-P | Field mustard | nucleus | 51.27 | 55.08 |
| CDX90092 | Canola | cytosol, mitochondrion | 9.6 | 54.4 |
| CDY56191 | Canola | cytosol | 51.84 | 51.54 |
| KRH57064 | Soybean | cytosol | 53.11 | 51.51 |
| KRH03299 | Soybean | cytosol | 26.41 | 46.87 |
| HORVU6Hr1G091620.4 | Barley | mitochondrion | 17.37 | 21.39 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:21.1.1.4.3 | ProteinID:AAM13438.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:HORVU6Hr1G069310 | EnsemblPlants:HORVU6Hr1G069310.1 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| PFAM:PF13176 | PFAM:PF13424 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR19959 | PANTHER:PTHR19959:SF156 |
| UniProt:Q8S408 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| UniParc:UPI00000A5179 | SEG:seg | : | : | : | : |
Description
Similar to A. thaliana protein BAB01483 similar [Source:UniProtKB/TrEMBL;Acc:Q8S408]
Coordinates
chrchr6H:+:479997832..480001716
Molecular Weight (calculated)
76765.4 Da
IEP (calculated)
4.819
GRAVY (calculated)
-0.480
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGIIVDGVV TEEIQHEVSS SQNKENLTAP TMAPSMQSEA LEMHVEDSGA GEPSIEQLYN NVCEMESSSE GGGSPSRESF GSDGEESRID SELRHLVAGE
101: MEAMKVIEEE EEKEKGSGSV TNAAPTAGNG TPARPQSSNS SKKKAAKSQL ESDASVGPNG KASPEEGESE VSKPGSRVGR RRKANAKSQN GTEDAGLDNP
201: DLGPFLLKHA RDLIASDNPR RALKYALRAT KSFEKCAGGK PSLNLVMSLH VVAAIHCNMG KYEEAVPVLQ RSLEIPVTEE GQEHALAKFS GCMQLGDTYG
301: MLGQIALSLQ WYAKGLDIQK QTLGEQDPRV GETCRYLAEA HVQALQLDEA QKLCQMALDI HRDNGQPASL EETADRRLMG LICDTKGDHE AALEHLVMAS
401: MAMVANGQET EVASVDCSIG DIYLSLGRYD EAVCAYQKAL TVFKTSKGEN HATVASVFLR LADLYNKTGK LRESKSYCEN ALKIYQKPIP GTSLEEIATG
501: LTDVSAIYET MNEHDQALKL LQKALKMYNN SAGQQSTIAG IEAQIGVLHY ISGNYGDAYD SFKSAITKLR TCGEKKSAFF GIALNQMGLA CVQRYSINEA
601: AELFEEARTV LEQEYGPYHA DTLGVYSNLA GTYDAMGRLD EAIEILEYVV EMREEKLGTA NPDVDDEKRR LAELLKEAGR GRSRKAKSLE NLLGTNPYTV
701: GKRTTVAA
101: MEAMKVIEEE EEKEKGSGSV TNAAPTAGNG TPARPQSSNS SKKKAAKSQL ESDASVGPNG KASPEEGESE VSKPGSRVGR RRKANAKSQN GTEDAGLDNP
201: DLGPFLLKHA RDLIASDNPR RALKYALRAT KSFEKCAGGK PSLNLVMSLH VVAAIHCNMG KYEEAVPVLQ RSLEIPVTEE GQEHALAKFS GCMQLGDTYG
301: MLGQIALSLQ WYAKGLDIQK QTLGEQDPRV GETCRYLAEA HVQALQLDEA QKLCQMALDI HRDNGQPASL EETADRRLMG LICDTKGDHE AALEHLVMAS
401: MAMVANGQET EVASVDCSIG DIYLSLGRYD EAVCAYQKAL TVFKTSKGEN HATVASVFLR LADLYNKTGK LRESKSYCEN ALKIYQKPIP GTSLEEIATG
501: LTDVSAIYET MNEHDQALKL LQKALKMYNN SAGQQSTIAG IEAQIGVLHY ISGNYGDAYD SFKSAITKLR TCGEKKSAFF GIALNQMGLA CVQRYSINEA
601: AELFEEARTV LEQEYGPYHA DTLGVYSNLA GTYDAMGRLD EAIEILEYVV EMREEKLGTA NPDVDDEKRR LAELLKEAGR GRSRKAKSLE NLLGTNPYTV
701: GKRTTVAA
001: MDVGESNERV KDDSALQASP RSPLSSIDLA IDGAMNASIE QLYHNVCEME SSDDQSPSRA SFISYGAESR IDLELRHLVG DVGEEGESKK EIILEKKEES
101: NGEGSLSQKK PLSNGKKVAK TSPNNPKMPG SRISSRKSPD LGKVSVDEES PELGVVLLKQ ARELVSSGEN LNKALDLALR AVKVFEKCGE GEKQLGLNLV
201: MSLHILAAIY AGLGRYNDAV PVLERSIEIP MIEDGEDHAL AKFAGCMQLG DMYGLMGQVE NSIMLYTAGL EIQRQVLGES DARVGETCRY LAEAHVQAMQ
301: FEEASRLCQM ALDIHKENGA AATASIEEAA DRKLMGLICD AKGDYEVALE HYVLASMAMS SQNHREDVAA VDCSIGDAYM SLARFDEAIF AYQKALAVFK
401: QGKGETHSSV ALVYVRLADL YNKIGKTRDS KSYCENALKI YLKPTPGTPM EEVATGFIEI SAIYQSMNEL DQALKLLRRA LKIYANAPGQ QNTIAGIEAQ
501: MGVVTYMMGN YSESYDIFKS AISKFRNSGE KKTALFGIAL NQMGLACVQR YAINEAADLF EEAKTILEKE CGPYHPDTLA VYSNLAGTYD AMGRLDDAIE
601: ILEYVVGTRE EKLGTANPEV EDEKQRLAAL LKEAGRGRSK RNRALLTLLD NNPEIANGQR PVY
101: NGEGSLSQKK PLSNGKKVAK TSPNNPKMPG SRISSRKSPD LGKVSVDEES PELGVVLLKQ ARELVSSGEN LNKALDLALR AVKVFEKCGE GEKQLGLNLV
201: MSLHILAAIY AGLGRYNDAV PVLERSIEIP MIEDGEDHAL AKFAGCMQLG DMYGLMGQVE NSIMLYTAGL EIQRQVLGES DARVGETCRY LAEAHVQAMQ
301: FEEASRLCQM ALDIHKENGA AATASIEEAA DRKLMGLICD AKGDYEVALE HYVLASMAMS SQNHREDVAA VDCSIGDAYM SLARFDEAIF AYQKALAVFK
401: QGKGETHSSV ALVYVRLADL YNKIGKTRDS KSYCENALKI YLKPTPGTPM EEVATGFIEI SAIYQSMNEL DQALKLLRRA LKIYANAPGQ QNTIAGIEAQ
501: MGVVTYMMGN YSESYDIFKS AISKFRNSGE KKTALFGIAL NQMGLACVQR YAINEAADLF EEAKTILEKE CGPYHPDTLA VYSNLAGTYD AMGRLDDAIE
601: ILEYVVGTRE EKLGTANPEV EDEKQRLAAL LKEAGRGRSK RNRALLTLLD NNPEIANGQR PVY
Arabidopsis Description
KLCR2Protein KINESIN LIGHT CHAIN-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LII8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.