Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G021140.2 | |
| HORVU3Hr1G021150.2 | |
| HORVU5Hr1G080210.1 | |
| HORVU5Hr1G117990.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G100800.1 | Wheat | nucleus | 92.42 | 91.65 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 92.21 | 91.44 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 92.84 | 88.02 |
| OQU90492 | Sorghum | nucleus | 69.89 | 68.59 |
| Os07t0685000-02 | Rice | nucleus | 67.37 | 67.23 |
| Zm00001d022525_P001 | Maize | nucleus | 67.79 | 62.52 |
| CDY69084 | Canola | nucleus | 24.42 | 42.34 |
| CDY00286 | Canola | nucleus | 24.21 | 42.12 |
| AT5G62430.1 | Thale cress | nucleus | 26.32 | 41.95 |
| Bra010082.1-P | Field mustard | nucleus | 23.58 | 41.79 |
| CDY67518 | Canola | nucleus | 25.05 | 40.75 |
| CDY69244 | Canola | nucleus | 24.84 | 40.41 |
| Bra029261.1-P | Field mustard | nucleus | 24.42 | 39.73 |
| Bra018141.1-P | Field mustard | nucleus | 34.11 | 37.94 |
| CDY66672 | Canola | nucleus | 34.11 | 37.94 |
| CDY47405 | Canola | nucleus | 33.89 | 37.53 |
| AT3G47500.1 | Thale cress | nucleus | 34.74 | 36.83 |
| VIT_17s0000g06310.t01 | Wine grape | nucleus | 36.0 | 36.15 |
| KRH03487 | Soybean | nucleus | 35.37 | 35.67 |
| VIT_01s0026g02580.t01 | Wine grape | nucleus | 34.74 | 34.59 |
| KRH56903 | Soybean | nucleus | 34.32 | 34.46 |
| KRH54567 | Soybean | nucleus | 32.84 | 34.06 |
| PGSC0003DMT400050273 | Potato | nucleus | 36.0 | 34.0 |
| Solyc03g115940.2.1 | Tomato | nucleus | 35.58 | 33.73 |
| KRH63324 | Soybean | nucleus | 33.26 | 33.62 |
| KRH18471 | Soybean | nucleus | 34.11 | 33.2 |
| PGSC0003DMT400083080 | Potato | nucleus | 33.68 | 32.52 |
| Solyc06g069760.2.1 | Tomato | nucleus | 33.68 | 32.52 |
| HORVU4Hr1G074990.1 | Barley | nucleus | 29.26 | 31.45 |
| KRG93541 | Soybean | nucleus | 25.05 | 30.91 |
| HORVU3Hr1G072970.1 | Barley | nucleus | 11.79 | 27.72 |
| HORVU3Hr1G061840.2 | Barley | nucleus, plastid | 8.63 | 24.55 |
| HORVU1Hr1G076800.1 | Barley | nucleus | 12.0 | 24.46 |
| HORVU2Hr1G119110.3 | Barley | nucleus | 10.32 | 23.0 |
| HORVU2Hr1G119160.3 | Barley | nucleus, plastid | 9.68 | 22.12 |
| HORVU4Hr1G013890.1 | Barley | nucleus | 12.0 | 21.35 |
Protein Annotations
| MapMan:15.5.1.5 | UniProt:A0A287H7D7 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU2Hr1G017290 | EnsemblPlants:HORVU2Hr1G017290.1 |
| InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 |
| PANTHER:PTHR31089:SF6 | UniParc:UPI000B462088 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:+:40284521..40288009
Molecular Weight (calculated)
50930.6 Da
IEP (calculated)
6.497
GRAVY (calculated)
-0.702
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MELAGAARPP PPEPDVAPPR TPPQAPAEEN SCKDTGDTRI TEEKSCTPHD LNLSQPNNSG LNSLSACENQ TSNGDEMTEP ESRLEAAKTE GDGSSKEKVL
101: KKPDKILPCP RCNSMDTKFC YYNNYNIHQP RHFCRGCQRY WTAGGSMRNL PVGAGRRKSK SSSTNCHGIF IPGSSLAPPG IPLPIKENQP AVKFGSDSTL
201: SNSMASLLRV EEQNKNSNLA STAHPRNGEN QTCPPSATTS DNPRTESVKV TAGVQQNGIA GDCNGVTPMP PIPCFPGPPF VYPWNPAWNG VPAMAAQVCP
301: VPAEPANCSE NGNGGTIQWN FPPMVPMPGF CGPPIPFPLM PPSVWPLVSP WPNGAWSAPW LGPSYNMSAA PPTSTSTCSD SGSPVLGKHP RDSDPQGGEK
401: AEKSLWIPKT LRIDDPDEAA KSSIWTTLGI EPGERGMFRP FQQKSGGREQ MSNAARVMQA NPAAQSRFES FQETT
101: KKPDKILPCP RCNSMDTKFC YYNNYNIHQP RHFCRGCQRY WTAGGSMRNL PVGAGRRKSK SSSTNCHGIF IPGSSLAPPG IPLPIKENQP AVKFGSDSTL
201: SNSMASLLRV EEQNKNSNLA STAHPRNGEN QTCPPSATTS DNPRTESVKV TAGVQQNGIA GDCNGVTPMP PIPCFPGPPF VYPWNPAWNG VPAMAAQVCP
301: VPAEPANCSE NGNGGTIQWN FPPMVPMPGF CGPPIPFPLM PPSVWPLVSP WPNGAWSAPW LGPSYNMSAA PPTSTSTCSD SGSPVLGKHP RDSDPQGGEK
401: AEKSLWIPKT LRIDDPDEAA KSSIWTTLGI EPGERGMFRP FQQKSGGREQ MSNAARVMQA NPAAQSRFES FQETT
001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI
Arabidopsis Description
CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.