CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91429
KRG91704
KRH08640
KRH35085
KRH35393
KRH41723
KRH60424

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	KRH41723	AT1G68050.1	16002617
AT3G47500.1	KRH60424	AT1G68050.1	16002617
AT5G62430.1	KRG91704	AT1G22770.1	17872410
AT5G62430.1	KRH08640	AT1G22770.1	17872410
AT5G62430.1	KRH35085	AT1G22770.1	17872410
AT5G62430.1	KRH41723	AT1G68050.1	16002617
AT5G62430.1	KRH60424	AT1G68050.1	16002617
AT5G62430.1	KRG91429	AT5G51910.1	21798944
AT5G62430.1	KRH35393	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63324	Soybean	nucleus	91.27	88.94
KRH03487	Soybean	nucleus	63.76	62.0
KRH56903	Soybean	nucleus	62.45	60.47
CDY69084	Canola	nucleus	36.03	60.22
AT5G62430.1	Thale cress	nucleus	38.86	59.73
CDY00286	Canola	nucleus	35.37	59.34
CDY67518	Canola	nucleus	37.12	58.22
CDY69244	Canola	nucleus	37.12	58.22
Bra029261.1-P	Field mustard	nucleus	36.46	57.19
Bra010082.1-P	Field mustard	nucleus	32.97	56.34
VIT_17s0000g06310.t01	Wine grape	nucleus	56.33	54.55
CDY66672	Canola	nucleus	47.38	50.82
Bra018141.1-P	Field mustard	nucleus	47.38	50.82
CDY47405	Canola	nucleus	47.38	50.58
VIT_01s0026g02580.t01	Wine grape	nucleus	51.53	49.48
AT3G47500.1	Thale cress	nucleus	47.6	48.66
KRH01188	Soybean	nucleus	52.4	47.9
Solyc03g115940.2.1	Tomato	nucleus	51.97	47.51
KRH40083	Soybean	nucleus	51.75	47.12
PGSC0003DMT400050273	Potato	nucleus	51.09	46.52
KRH42862	Soybean	nucleus	7.86	46.15
KRH74885	Soybean	nucleus	45.63	43.63
KRH18471	Soybean	nucleus	46.07	43.24
KRH50577	Soybean	nucleus	45.2	43.22
KRH70746	Soybean	nucleus, plastid	45.41	42.89
KRH21283	Soybean	nucleus	13.54	42.18
KRH11011	Soybean	nucleus	13.97	41.83
KRG89621	Soybean	nucleus	43.67	41.49
KRH58964	Soybean	nucleus	14.85	41.21
PGSC0003DMT400083080	Potato	nucleus	44.1	41.06
Solyc06g069760.2.1	Tomato	nucleus	43.23	40.24
KRG93541	Soybean	nucleus	33.41	39.74
Os03t0169600-01	Rice	nucleus	34.72	36.14
EER95426	Sorghum	nucleus	33.19	35.85
TraesCS4A01G017700.1	Wheat	nucleus	34.06	35.7
HORVU4Hr1G074990.1	Barley	nucleus	34.06	35.29
TraesCS4B01G286400.1	Wheat	nucleus	33.19	35.1
TraesCS4D01G285100.1	Wheat	nucleus	33.84	35.07
Os07t0685000-02	Rice	nucleus	36.24	34.87
OQU90492	Sorghum	nucleus	36.46	34.5
Zm00001d027846_P001	Maize	nucleus	32.1	34.03
KRG94921	Soybean	nucleus	35.37	33.54
TraesCS2A01G100800.1	Wheat	nucleus	34.93	33.4
TraesCS2B01G118000.1	Wheat	nucleus	34.72	33.19
KRH64974	Soybean	nucleus	33.19	32.97
HORVU2Hr1G017290.1	Barley	nucleus	34.06	32.84
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	34.72	31.74
Zm00001d022525_P001	Maize	nucleus	35.59	31.65
KRH44749	Soybean	nucleus	29.69	31.34
KRH13096	Soybean	nucleus, vacuole	31.44	30.9
KRH47156	Soybean	nucleus	13.32	28.91
KRH09992	Soybean	nucleus	13.32	28.91
KRH44186	Soybean	nucleus	13.32	28.64
KRH23341	Soybean	nucleus	12.88	27.83
KRH70017	Soybean	nucleus	13.76	26.92
KRH08373	Soybean	nucleus	13.1	25.42

Protein Annotations

EntrezGene:100798021	MapMan:15.5.1.5	EMBL:ACUP02003541	EnsemblPlantsGene:GLYMA_06G194800	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1KCU1	InterPro:IPR003851	EnsemblPlants:KRH54567	ProteinID:KRH54567	ProteinID:KRH54567.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI00023395C9
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:17380429..17383764

Molecular Weight (calculated)

50241.1 Da

IEP (calculated)

6.829

GRAVY (calculated)

-0.915

Length

458 amino acids

Sequence
(BLAST)

001: MQENKDPAIK LFGQKIAFAG EVDPPAISAG EIDSPPAMDV DKDEEDDFGD SETEDEKDKD PRAEKVSEKT KEADPPPNAA DSKKTPEGIQ NPNTPSIDEE
101: SAKSKTNKSE NNNNNKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRY FCKACQRYWT AGGTMRNVPV GAGRRKNKNS ASHYRHITIS EALQAARIDA
201: APNGTHHLLK PNGRVLSFGL ELDPPICDSM ASVLNLTAEK KGTLNNNSRN NNNNNNNNGD DCSSASSITV SNEENGKSTS QESIVVPNSN GFIHHVPCIS
301: TLPWPYPFPS GAPAMCPPGF PMSFYPAAFW NIPWFPSQHS HHSSAPTPRS PNSPTLGKHS RDDDATKQYH LQEEQPPSRQ RNGSVLVPKT LRIDDPSEAA
401: KSSIWATLGI KNECVTGGGM FKGFQSKKEE KDHVVEASPV LRANPAALSR SLNFHENS

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.