Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG91704 | Soybean | cytosol | 96.86 | 96.77 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 81.65 | 82.14 |
| KRH08640 | Soybean | cytosol | 75.62 | 81.35 |
| Solyc04g071990.2.1 | Tomato | cytosol | 75.36 | 76.01 |
| Solyc12g056650.1.1 | Tomato | nucleus | 75.02 | 75.66 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 56.41 | 75.2 |
| AT1G22770.1 | Thale cress | cytosol | 74.85 | 75.11 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 74.17 | 74.55 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 74.09 | 74.47 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 74.0 | 74.44 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 38.83 | 73.59 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 69.5 | 72.01 |
| GSMUA_Achr10P... | Banana | cytosol | 70.52 | 70.88 |
| Os01t0182600-03 | Rice | nucleus | 69.16 | 70.17 |
| KXG31676 | Sorghum | nucleus | 68.73 | 69.62 |
| Zm00001d039589_P136 | Maize | plasma membrane | 69.07 | 68.96 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 67.54 | 68.95 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 67.63 | 68.92 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 67.54 | 68.83 |
| Zm00001d008826_P078 | Maize | nucleus | 68.73 | 68.44 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 14.44 | 68.0 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 22.26 | 65.5 |
| HORVU3Hr1G021140.2 | Barley | plastid | 53.19 | 64.07 |
| PGSC0003DMT400002842 | Potato | plastid | 4.25 | 44.64 |
Protein Annotations
| EMBL:ACUP02006650 | EnsemblPlants:KRH35085 | EnsemblPlantsGene:GLYMA_10G221500 | EntrezGene:100800578 | GO:GO:0000003 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | ncoils:Coil |
| PANTHER:PTHR36319 | PRINTS:PR02081 | ProteinID:KRH35084.1 | ProteinID:KRH35085 | ProteinID:KRH35085.1 | ProteinID:KRH35086.1 |
| SEG:seg | UniParc:UPI00023CDA64 | UniProt:A0A0R0HXK5 | MapMan:26.1.2.3.2 | : | : |
Description
hypothetical protein
Coordinates
chr10:+:45294735..45316121
Molecular Weight (calculated)
128606.0 Da
IEP (calculated)
6.734
GRAVY (calculated)
-0.055
Length
1177 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSSSSSMAA SSERWIDRLQ YSSLFWPPPP DGQQRKDQIA AYVEYFIQFT SEQFADDIAE LIRNHYPSKD ILLFDDVLAT FVLHHPEHGH AVVLPIISCI
0101: IDGTLVYDKA SPPFASFISS VCPKIENEYS EEWALACGEI LRILTHYNRP IYKTERQSGE TERSTSGSHA TTSEPGKSGH NSLTQHEKKP IRPLSPWITD
0201: ILLASPVGIR SDYFRWCSGI MGKYAAGELK PPSTASSRGS GKHPQLVPST PRWAVANGAG VILSVCDDEV ARNETATLTA AAVPALLLPP PTTALDEHLV
0301: AGLPALEPYA RLFHRYYAIA TPSATQRLLL GLLEAPPSWA PDALDAAVQL VELLRAAEDY ASGIRLPRNW MHLHFLRAIG TAMSMRAGIA ADAAAALLFR
0401: ILSQPALLFP PLRQVDGVEV QHEPLGGYIS SYKKQIEVPA AEASIEATAQ GIASMLCAHG PEVEWRICTI WEAAYGLIPT SSSAVDLPEI IVATPLQPPV
0501: LSWNLYIPLL KVLEYLPRGS PSEACLMKIF AATVEAILQR TFPPESTREQ NRKSKYLAGI GFGSASKNLA VAELRTMVHS LFLESCASVE LASRLLFVVL
0601: TVCVSHEAQF SGSKRPRGED NYSSEDIIED LQTSENQKES KNRKLKKQGP VAAFDSYVLA AVCALACELQ LFPLISRGNN HLASNKVQDI AKPVRLNGSS
0701: HELRNGLDSA VRHTHRILAI LEALFSLKPS SVGTPWSYSS NEIVAAAMVA AHVSELFRRS KACMHALSVL IRCKWDNEIH SRASSLYNLI DIHSKAVASI
0801: VNKAEPLEAT LIHAPIRKDS LVCVGVKRQN QCESSSCFDA GRTSVVPSED SFPSKLDHNS NKTPCPKGAS DYTLGKGVTG FSLDASDLAN FLTMDRHIGL
0901: NCNGQIFLRS TLAEKQELCF SVVSLLWHKL IASPETQPCA ESTSAQQGWR QVVDALCNVV SASPTKAATA VVLQAERELQ PWIAKDDDSG QKMWRINQRI
1001: VKLIVELMRN HETAESLVIV ASSSDLLLRA TDGMLVDGEA CTLPQLELLE ATARAVQPVL EFGESGLAVA DGLSNLLKCR LSATIRCLSH PSAHVRALSI
1101: SVLRDILHTG SIRCSPKPRR LNGTHNPSYQ YFNLDAVDWQ ADIEKCLTWE AHSRLSNGLS INFLDIAAKE LGCTISM
0101: IDGTLVYDKA SPPFASFISS VCPKIENEYS EEWALACGEI LRILTHYNRP IYKTERQSGE TERSTSGSHA TTSEPGKSGH NSLTQHEKKP IRPLSPWITD
0201: ILLASPVGIR SDYFRWCSGI MGKYAAGELK PPSTASSRGS GKHPQLVPST PRWAVANGAG VILSVCDDEV ARNETATLTA AAVPALLLPP PTTALDEHLV
0301: AGLPALEPYA RLFHRYYAIA TPSATQRLLL GLLEAPPSWA PDALDAAVQL VELLRAAEDY ASGIRLPRNW MHLHFLRAIG TAMSMRAGIA ADAAAALLFR
0401: ILSQPALLFP PLRQVDGVEV QHEPLGGYIS SYKKQIEVPA AEASIEATAQ GIASMLCAHG PEVEWRICTI WEAAYGLIPT SSSAVDLPEI IVATPLQPPV
0501: LSWNLYIPLL KVLEYLPRGS PSEACLMKIF AATVEAILQR TFPPESTREQ NRKSKYLAGI GFGSASKNLA VAELRTMVHS LFLESCASVE LASRLLFVVL
0601: TVCVSHEAQF SGSKRPRGED NYSSEDIIED LQTSENQKES KNRKLKKQGP VAAFDSYVLA AVCALACELQ LFPLISRGNN HLASNKVQDI AKPVRLNGSS
0701: HELRNGLDSA VRHTHRILAI LEALFSLKPS SVGTPWSYSS NEIVAAAMVA AHVSELFRRS KACMHALSVL IRCKWDNEIH SRASSLYNLI DIHSKAVASI
0801: VNKAEPLEAT LIHAPIRKDS LVCVGVKRQN QCESSSCFDA GRTSVVPSED SFPSKLDHNS NKTPCPKGAS DYTLGKGVTG FSLDASDLAN FLTMDRHIGL
0901: NCNGQIFLRS TLAEKQELCF SVVSLLWHKL IASPETQPCA ESTSAQQGWR QVVDALCNVV SASPTKAATA VVLQAERELQ PWIAKDDDSG QKMWRINQRI
1001: VKLIVELMRN HETAESLVIV ASSSDLLLRA TDGMLVDGEA CTLPQLELLE ATARAVQPVL EFGESGLAVA DGLSNLLKCR LSATIRCLSH PSAHVRALSI
1101: SVLRDILHTG SIRCSPKPRR LNGTHNPSYQ YFNLDAVDWQ ADIEKCLTWE AHSRLSNGLS INFLDIAAKE LGCTISM
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.