Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0169600-01 | |
| Os07t0685000-02 | |
| Os08t0559300-01 | |
| Os11t0547000-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31676 | Sorghum | nucleus | 91.72 | 91.57 |
| Zm00001d008826_P078 | Maize | nucleus | 91.81 | 90.1 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 88.88 | 89.26 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 88.71 | 89.25 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 19.22 | 89.2 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 88.71 | 89.09 |
| Zm00001d039589_P136 | Maize | plasma membrane | 90.43 | 88.97 |
| HORVU3Hr1G021140.2 | Barley | plastid | 69.57 | 82.6 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 43.45 | 81.16 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 75.0 | 76.58 |
| GSMUA_Achr10P... | Banana | cytosol | 75.78 | 75.06 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.28 | 72.65 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 23.88 | 69.25 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 70.17 | 69.16 |
| Solyc04g071990.2.1 | Tomato | cytosol | 69.4 | 68.98 |
| KRG91704 | Soybean | cytosol | 69.91 | 68.85 |
| Solyc12g056650.1.1 | Tomato | nucleus | 68.71 | 68.29 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 68.88 | 68.23 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 68.71 | 68.12 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 68.71 | 68.06 |
| KRH08640 | Soybean | cytosol | 64.14 | 68.01 |
| AT1G22770.1 | Thale cress | cytosol | 68.53 | 67.77 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 50.26 | 66.02 |
| PGSC0003DMT400002842 | Potato | plastid | 3.36 | 34.82 |
Protein Annotations
| MapMan:26.1.2.3.2 | EntrezGene:4325329 | EMBL:AJ133787 | EMBL:AK067038 | ProteinID:BAD68052.1 | ProteinID:BAD68053.1 |
| ProteinID:BAF04134.1 | ProteinID:BAS70743.1 | InterPro:GIGANTEA | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010218 |
| GO:GO:0010378 | GO:GO:0030154 | GO:GO:0042542 | GO:GO:0042752 | GO:GO:0048511 | GO:GO:0048578 |
| GO:GO:0080167 | GO:GO:2000028 | EnsemblPlantsGene:Os01g0182600 | EnsemblPlants:Os01t0182600-03 | PRINTS:PR02081 | PANTHER:PTHR36319 |
| UniProt:Q9AWL7 | UniParc:UPI0000457D50 | RefSeq:XP_015649578.1 | RefSeq:XP_015649583.1 | RefSeq:XP_015649590.1 | RefSeq:XP_015649597.1 |
| RefSeq:XP_015649603.1 | RefSeq:XP_015649609.1 | SEG:seg | : | : | : |
Description
GIGANTEAGIGANTEA protein. (Os01t0182600-01);GIGANTEA protein. (Os01t0182600-03)
Coordinates
chr1:-:4329362..4338444
Molecular Weight (calculated)
127074.0 Da
IEP (calculated)
6.834
GRAVY (calculated)
-0.102
Length
1160 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSASNEKWID GLQFSSLFWP PPQDSQQKQA QILAYVEYFG QFTADSEQFP EDIAQLIQSC YPSKEKRLVD EVLATFVLHH PEHGHAVVHP ILSRIIDGTL
0101: SYDRNGFPFM SFISLFSHTS EKEYSEQWAL ACGEILRVLT HYNRPIFKVD HQHSEAECSS TSDQASSCES MEKRANGSPR NEPDRKPLRP LSPWITDILL
0201: AAPLGIRSDY FRWCGGVMGK YAAGGELKPP TTAYSRGSGK HPQLMPSTPR WAVANGAGVI LSVCDEEVAR YETANLTAAA VPALLLPPPT TPLDEHLVAG
0301: LPPLEPYARL FHRYYAIATP SATQRLLFGL LEAPPSWAPD ALDAAVQLVE LLRAAEDYDS GMRLPKNWMH LHFLRAIGTA MSMRAGIAAD TSAALLFRIL
0401: SQPTLLFPPL RHAEGVELHH EPLGGYVSSY KRQLEVPASE ATIDATAQGI ASMLCAHGPD VEWRICTIWE AAYGLLPLSS SAVDLPEIVV AAPLQPPTLS
0501: WSLYLPLLKV FEYLPRGSPS EACLMRIFVA TVEAILRRTF PSETSEQSRK PRSQSKNLAV AELRTMIHSL FVESCASMDL ASRLLFVVLT VCVSHQALPG
0601: GSKRPTGSDN HSSEEVTNDS RLTNGRNRCK KRQGPVATFD SYVLAAVCAL SCELQLFPFI SKNGNHSNLK DSIKIVIPGK TTGISNELHN SISSAILHTR
0701: RILGILEALF SLKPSSVGTS WSYSSNEIVA AAMVAAHVSE LFRRSRPCLN ALSALKQCKW DAEISTRASS LYHLIDLHGK TVTSIVNKAE PLEAHLTLTP
0801: VKKDEPPIEE KNINSSDGGA LEKKDASRSH RKNGFARPLL KCAEDVILNG DVASTSGKAI ASLQVEASDL ANFLTMDRNG GYRGSQTLLR SVLSEKQELC
0901: FSVVSLLWQK LIASPEMQMS AESTSAHQGW RKVVDALCDI VSASPTKASA AIVLQAEKDL QPWIARDDEQ GQKMWRVNQR IVKLIAELMR NHDSPEALVI
1001: LASASDLLLR ATDGMLVDGE ACTLPQLELL EVTARAVHLI VEWGDSGVSV ADGLSNLLKC RLSTTIRCLS HPSAHVRALS MSVLRDILNS GQINSSKLIQ
1101: GEHRNGIQSP TYQCLAASII NWQADVERCI EWEAHSRRAT GLTLAFLTAA AKELGCPLTC
0101: SYDRNGFPFM SFISLFSHTS EKEYSEQWAL ACGEILRVLT HYNRPIFKVD HQHSEAECSS TSDQASSCES MEKRANGSPR NEPDRKPLRP LSPWITDILL
0201: AAPLGIRSDY FRWCGGVMGK YAAGGELKPP TTAYSRGSGK HPQLMPSTPR WAVANGAGVI LSVCDEEVAR YETANLTAAA VPALLLPPPT TPLDEHLVAG
0301: LPPLEPYARL FHRYYAIATP SATQRLLFGL LEAPPSWAPD ALDAAVQLVE LLRAAEDYDS GMRLPKNWMH LHFLRAIGTA MSMRAGIAAD TSAALLFRIL
0401: SQPTLLFPPL RHAEGVELHH EPLGGYVSSY KRQLEVPASE ATIDATAQGI ASMLCAHGPD VEWRICTIWE AAYGLLPLSS SAVDLPEIVV AAPLQPPTLS
0501: WSLYLPLLKV FEYLPRGSPS EACLMRIFVA TVEAILRRTF PSETSEQSRK PRSQSKNLAV AELRTMIHSL FVESCASMDL ASRLLFVVLT VCVSHQALPG
0601: GSKRPTGSDN HSSEEVTNDS RLTNGRNRCK KRQGPVATFD SYVLAAVCAL SCELQLFPFI SKNGNHSNLK DSIKIVIPGK TTGISNELHN SISSAILHTR
0701: RILGILEALF SLKPSSVGTS WSYSSNEIVA AAMVAAHVSE LFRRSRPCLN ALSALKQCKW DAEISTRASS LYHLIDLHGK TVTSIVNKAE PLEAHLTLTP
0801: VKKDEPPIEE KNINSSDGGA LEKKDASRSH RKNGFARPLL KCAEDVILNG DVASTSGKAI ASLQVEASDL ANFLTMDRNG GYRGSQTLLR SVLSEKQELC
0901: FSVVSLLWQK LIASPEMQMS AESTSAHQGW RKVVDALCDI VSASPTKASA AIVLQAEKDL QPWIARDDEQ GQKMWRVNQR IVKLIAELMR NHDSPEALVI
1001: LASASDLLLR ATDGMLVDGE ACTLPQLELL EVTARAVHLI VEWGDSGVSV ADGLSNLLKC RLSTTIRCLS HPSAHVRALS MSVLRDILNS GQINSSKLIQ
1101: GEHRNGIQSP TYQCLAASII NWQADVERCI EWEAHSRRAT GLTLAFLTAA AKELGCPLTC
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.