Factsheet for Os07t0685000-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0182600-03
Os08t0544800-01
Os09t0521300-00
Os11t0547000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	Os11t0547000-01	AT1G68050.1	16002617
AT5G62430.1	Os01t0182600-03	AT1G22770.1	17872410
AT5G62430.1	Os11t0547000-01	AT1G68050.1	16002617
AT5G62430.1	Os08t0544800-01	AT5G51910.1	21798944
AT5G62430.1	Os09t0521300-00	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90492	Sorghum	nucleus	74.16	72.93
TraesCS2A01G100800.1	Wheat	nucleus	68.28	67.85
TraesCS2B01G118000.1	Wheat	nucleus	68.07	67.64
HORVU2Hr1G017290.1	Barley	nucleus	67.23	67.37
Zm00001d022525_P001	Maize	nucleus	71.01	65.63
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	68.91	65.47
Bra010082.1-P	Field mustard	nucleus	24.79	44.03
CDY00286	Canola	nucleus	25.0	43.59
AT5G62430.1	Thale cress	nucleus	26.89	42.95
CDY67518	Canola	nucleus	25.84	42.12
CDY69084	Canola	nucleus	24.16	41.97
CDY69244	Canola	nucleus	25.63	41.78
Bra029261.1-P	Field mustard	nucleus	25.21	41.1
Bra018141.1-P	Field mustard	nucleus	34.45	38.41
CDY66672	Canola	nucleus	34.45	38.41
CDY47405	Canola	nucleus	34.24	38.0
VIT_17s0000g06310.t01	Wine grape	nucleus	37.4	37.63
KRH03487	Soybean	nucleus	36.34	36.73
KRH56903	Soybean	nucleus	36.34	36.58
KRH54567	Soybean	nucleus	34.87	36.24
AT3G47500.1	Thale cress	nucleus	34.03	36.16
VIT_01s0026g02580.t01	Wine grape	nucleus	35.92	35.85
KRH63324	Soybean	nucleus	35.29	35.74
Os01t0264000-01	Rice	nucleus	36.97	35.48
Os03t0169600-01	Rice	nucleus	32.56	35.23
Solyc03g115940.2.1	Tomato	nucleus	36.76	34.93
PGSC0003DMT400050273	Potato	nucleus	36.55	34.59
KRH18471	Soybean	nucleus	35.29	34.43
Os10t0406300-01	Rice	nucleus	13.66	33.51
Solyc06g069760.2.1	Tomato	nucleus	34.45	33.33
PGSC0003DMT400083080	Potato	nucleus	34.24	33.13
KRG93541	Soybean	nucleus	25.42	31.43
Os01t0277500-01	Rice	nucleus	34.87	29.96
Os01t0758200-01	Rice	nucleus	12.18	27.49
Os09t0475800-01	Rice	nucleus	12.39	25.65
Os04t0678400-01	Rice	plastid	10.08	23.3
Os08t0490100-01	Rice	nucleus	12.82	22.1
Os01t0673700-00	Rice	nucleus	8.82	12.77

Protein Annotations

MapMan:15.5.1.5	EntrezGene:4344326	EMBL:AK104095	EMBL:AY224430	ProteinID:BAC83814.1	ProteinID:BAF22587.1
ProteinID:BAT03277.1	ProteinID:EEE67837.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EnsemblPlantsGene:Os07g0685000
EnsemblPlants:Os07t0685000-02	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089
PANTHER:PTHR31089:SF6	UniProt:Q84PD2	UniParc:UPI000005F89F	RefSeq:XP_015647890.1	InterPro:Znf_Dof	SEG:seg

Description

RICE DOF DAILY FLUCTUATIONS 2Similar to Dof3 gene (Fragment). (Os07t0685000-02)

Coordinates

chr7:-:29077209..29081176

Molecular Weight (calculated)

50819.8 Da

IEP (calculated)

5.473

GRAVY (calculated)

-0.719

Length

476 amino acids

Sequence
(BLAST)

001: MDDLAAASPP HPPPPPPESH VPPPPQTPEK DSCEDTGDMR ISEEKPCTDQ ELDADQMNSS SFNSSSECEN QTPSNDEMTG SESKSEAAQT EGGGSSEEKV
101: LKKPDKILPC PRCNSMDTKF CYYNNYNINQ PRHFCKSCQR YWTAGGSMRN LPVGAGRRKS KSSTANYRSI LITGSNLAAP AGDAPLYQLS IKGDQTATAV
201: KFAPDSPLCN SMASVLKIGE QSKNAKPTST AQPRNGETQT CPASGTTSDS PRNEPVNGAV SGHQNGIVGH SGVPPMHPIP CFPGPPFVYP WSPAWNGIPA
301: MAPPVCTAPA EPANSSDNGS TASVQWSMPP VMPVPGYFPV IPSSVWPFIS PWPNGAWSSP WIQPNCSVSA SSPTSTSTCS DNGSPVLGKH SRDSKPQGDD
401: KAEKNLWIPK TLRIDDPDEA AKSSIWTTLG IEPGDRSMFR SFQSKPESRE QISGAARVLQ ANPAALSRSQ SFQETT

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.