Factsheet for VIT_01s0026g02580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05810.t01
VIT_18s0157g00020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	VIT_01s0011g05810.t01	AT1G68050.1	16002617
AT5G62430.1	VIT_18s0157g00020.t01	AT1G22770.1	17872410
AT5G62430.1	VIT_01s0011g05810.t01	AT1G68050.1	16002617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00980.t01	Wine grape	nucleus	66.67	62.23
CDY00286	Canola	nucleus	32.7	57.14
VIT_17s0000g06310.t01	Wine grape	nucleus	55.35	55.81
AT5G62430.1	Thale cress	nucleus	34.8	55.7
CDY67518	Canola	nucleus	33.75	55.14
CDY69244	Canola	nucleus	33.75	55.14
CDY69084	Canola	nucleus	31.66	55.11
Bra010082.1-P	Field mustard	nucleus	30.82	54.85
Bra029261.1-P	Field mustard	nucleus	33.12	54.11
KRH56903	Soybean	nucleus	51.36	51.8
KRH54567	Soybean	nucleus	49.48	51.53
KRH03487	Soybean	nucleus	50.52	51.17
VIT_10s0003g01260.t01	Wine grape	nucleus	16.98	50.94
KRH63324	Soybean	nucleus	49.9	50.64
KRH18471	Soybean	nucleus	51.78	50.61
PGSC0003DMT400050273	Potato	nucleus	51.78	49.11
Solyc03g115940.2.1	Tomato	nucleus	51.15	48.7
KRG93541	Soybean	nucleus	38.99	48.31
CDY66672	Canola	nucleus	43.19	48.24
Bra018141.1-P	Field mustard	nucleus	43.19	48.24
CDY47405	Canola	nucleus	42.77	47.55
AT3G47500.1	Thale cress	nucleus	43.4	46.21
PGSC0003DMT400083080	Potato	nucleus	44.23	42.89
Solyc06g069760.2.1	Tomato	nucleus	43.19	41.87
EER95426	Sorghum	nucleus	36.48	41.04
Os03t0169600-01	Rice	nucleus	36.06	39.09
TraesCS4A01G017700.1	Wheat	nucleus	35.64	38.9
TraesCS4B01G286400.1	Wheat	nucleus	34.8	38.34
VIT_08s0056g01230.t01	Wine grape	nucleus	39.41	38.06
HORVU4Hr1G074990.1	Barley	nucleus	35.22	38.01
TraesCS4D01G285100.1	Wheat	nucleus	35.22	38.01
Zm00001d027846_P001	Maize	nucleus	34.38	37.96
Os07t0685000-02	Rice	nucleus	35.85	35.92
OQU90492	Sorghum	nucleus	35.85	35.33
TraesCS2A01G100800.1	Wheat	nucleus	35.22	35.07
HORVU2Hr1G017290.1	Barley	nucleus	34.59	34.74
VIT_07s0255g00020.t01	Wine grape	nucleus	15.93	34.55
TraesCS2B01G118000.1	Wheat	nucleus	34.17	34.03
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	35.01	33.33
VIT_03s0063g01350.t01	Wine grape	nucleus	11.95	32.95
VIT_18s0001g11310.t01	Wine grape	nucleus	15.51	32.74
Zm00001d022525_P001	Maize	nucleus	35.01	32.43
VIT_09s0002g02490.t01	Wine grape	nucleus	14.68	32.41

Protein Annotations

EntrezGene:100265355	wikigene:100265355	MapMan:15.5.1.5	ProteinID:CCB56536	ProteinID:CCB56536.1	UniProt:F6HPQ5
EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EntrezGene:LOC100265355	wikigene:LOC100265355
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7
TIGR:TC52472	TIGR:TC61158	UniParc:UPI0002108830	ArrayExpress:VIT_01s0026g02580	EnsemblPlantsGene:VIT_01s0026g02580	EnsemblPlants:VIT_01s0026g02580.t01
unigene:Vvi.13973	RefSeq:XP_002269461	RefSeq:XP_002269461.2	InterPro:Znf_Dof	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:12212183..12215486

Molecular Weight (calculated)

51546.9 Da

IEP (calculated)

7.304

GRAVY (calculated)

-0.758

Length

477 amino acids

Sequence
(BLAST)

001: MLDFKDPAIK LFGKTISLPL NPHLSPTSPP PPPLSSTTSF PDDTSQGLQP PSQDQKPLEG QEFEGKEEDG TSRQTSEELK DPTASPGVSE NPETPSADKE
101: TSKDGEQSEI SGSQEKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS SASQYRHIMV SEALQTARAS
201: AANGIHHPAL GNNGTVLNFG SDGPLCESVA SVLNLADKTQ NCMQNGFHKS EQRIPASCGG GENGDDHSSI TLTNSAEKGN IAGLEPVVKN FQAFSPHVPC
301: FPGASWSYPW NPAQWSSKIP PPAFCPPGFP ISFYPAPAYW GCTVPGSWNI PCIPPTSSSP IHSALATNHN SPTLGKHARD GEVLNPANPG KEDHQKENNP
401: ERGVWIPKTL RIDDPNEAAK SSIWTTLGIK NDGSNGGSLL KAFQSKGDEK KRIAEMSPVL QANPAALSRS LNFHERA

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.