Factsheet for VIT_07s0255g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70017	Soybean	nucleus	66.82	62.82
KRH08373	Soybean	nucleus	67.27	62.71
PGSC0003DMT400026137	Potato	nucleus	67.27	61.67
VIT_18s0001g11310.t01	Wine grape	nucleus	62.27	60.62
Solyc02g090220.2.1	Tomato	nucleus	65.45	55.81
VIT_03s0063g01350.t01	Wine grape	nucleus	39.09	49.71
VIT_09s0002g02490.t01	Wine grape	nucleus	40.91	41.67
VIT_10s0003g01260.t01	Wine grape	nucleus	23.64	32.7
Zm00001d039482_P001	Maize	nucleus	34.09	32.47
KXG31638	Sorghum	nucleus	34.09	31.91
TraesCS3D01G108600.1	Wheat	nucleus	33.18	31.74
TraesCS3B01G125100.1	Wheat	nucleus	32.27	30.87
TraesCS3A01G106500.1	Wheat	nucleus	32.73	30.25
VIT_01s0026g02580.t01	Wine grape	nucleus	34.55	15.93
VIT_14s0108g00980.t01	Wine grape	nucleus	35.45	15.26
VIT_17s0000g06310.t01	Wine grape	nucleus	31.82	14.8
VIT_08s0056g01230.t01	Wine grape	nucleus	29.09	12.96

Protein Annotations

EntrezGene:100855283	wikigene:100855283	MapMan:15.5.1.5	UniProt:A5AM99	EMBL:AM430014	ProteinID:CAN75830
ProteinID:CAN75830.1	ProteinID:CCB62848	ProteinID:CCB62848.1	EMBL:FN596776	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	EntrezGene:LOC100855283	wikigene:LOC100855283	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF12	TIGR:TC60936	UniParc:UPI000151F0D8	ArrayExpress:VIT_07s0255g00020
EnsemblPlantsGene:VIT_07s0255g00020	EnsemblPlants:VIT_07s0255g00020.t01	RefSeq:XP_003632455	RefSeq:XP_003632455.1	InterPro:Znf_Dof	SEG:seg

Description

No Description!

Coordinates

chr7:-:14346778..14347676

Molecular Weight (calculated)

22934.8 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.454

Length

220 amino acids

Sequence
(BLAST)

001: MPSDSGDKRP SKPHQTGAPP PEQEHLPCPR CDSTNTKFCY YNNYNFSQPR HFCKSCRRYW THGGTLRDIP VGGGSRKNAK RSRTTTSSAS SQEPLPATPV
101: LVSLSTNHAT SMPFVGDVKP TVNVCGSFTS LLNTQGPGFL ALGGFGLGLG PGFEDMGFGL GRGVWPFPGA GDGGASGGTG GGTALVGNTW QFESGEGGFV
201: AGDCFSWPDL AISTPGNGLK

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.