Factsheet for VIT_10s0003g01260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030124.1-P	Field mustard	nucleus	52.2	68.03
KRH42862	Soybean	nucleus	32.08	65.38
CDY71347	Canola	nucleus	52.83	63.64
CDX99791	Canola	nucleus	65.41	60.12
AT1G29160.1	Thale cress	nucleus	65.41	59.43
AT2G34140.1	Thale cress	nucleus	62.89	58.82
Bra032292.1-P	Field mustard	nucleus	63.52	57.71
CDY50789	Canola	nucleus	63.52	57.71
KRH21283	Soybean	nucleus	52.83	57.14
Solyc02g076850.1.1	Tomato	nucleus	58.49	57.06
PGSC0003DMT400087458	Potato	nucleus	58.49	56.36
CDY43321	Canola	nucleus	61.64	56.32
CDX90171	Canola	nucleus	61.64	56.32
KRH58964	Soybean	nucleus	57.86	55.76
KRH11011	Soybean	nucleus	53.46	55.56
Bra010848.1-P	Field mustard	nucleus	61.01	55.43
CDY37670	Canola	nucleus	57.23	54.17
CDY15647	Canola	nucleus	59.75	53.67
Bra021895.1-P	Field mustard	nucleus	56.6	53.57
CDY67393	Canola	nucleus	57.23	53.53
VIT_03s0063g01350.t01	Wine grape	nucleus	25.79	23.7
VIT_07s0255g00020.t01	Wine grape	nucleus	32.7	23.64
VIT_18s0001g11310.t01	Wine grape	nucleus	32.7	23.01
VIT_09s0002g02490.t01	Wine grape	nucleus	30.19	22.22
VIT_01s0026g02580.t01	Wine grape	nucleus	50.94	16.98
VIT_17s0000g06310.t01	Wine grape	nucleus	49.06	16.49
VIT_08s0056g01230.t01	Wine grape	nucleus	50.31	16.19
TraesCS3D01G193100.1	Wheat	nucleus	48.43	16.18
TraesCS3A01G189600.1	Wheat	nucleus	47.8	15.97
VIT_14s0108g00980.t01	Wine grape	nucleus	50.94	15.85
Zm00001d040455_P001	Maize	nucleus	47.17	14.62
EES00579	Sorghum	nucleus	46.54	14.45
Os01t0277500-01	Rice	nucleus	48.43	13.9

Protein Annotations

EntrezGene:100244549	wikigene:100244549	MapMan:15.5.1.5	ProteinID:CCB55683	ProteinID:CCB55683.1	UniProt:F6HM95
EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EntrezGene:LOC100244549	wikigene:LOC100244549
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF14
UniParc:UPI00015CBDD1	ArrayExpress:VIT_10s0003g01260	EnsemblPlantsGene:VIT_10s0003g01260	EnsemblPlants:VIT_10s0003g01260.t01	RefSeq:XP_002266522	RefSeq:XP_002266522.2
InterPro:Znf_Dof	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:2577215..2577834

Molecular Weight (calculated)

17549.9 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.632

Length

159 amino acids

Sequence
(BLAST)

001: MANQVHAAQD APGIKLFGAT IALHGGEVKE EANNKGDHKE EKRPEKIIPC PRCKSMETKF CYFNNYNVNQ PRHFCKGCQR YWTAGGALRN VPVGAGRRKS
101: KPPCRGVAGF LESCLFDASA GVHQFDLEGV VVEEWHMGGF RHAFPAKRRR SSSSGGQTC

Best Arabidopsis Sequence Match ( AT1G29160.1 )
(BLAST)

001: MATQDSQGIK LFGKTITFNA NITQTIKKEE QQQQQQPELQ ATTAVRSPSS DLTAEKRPDK IIPCPRCKSM ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG
101: ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA TASHGGFRHD FPVKRLRCYT DGQSC

Arabidopsis Description

DOF1.5Uncharacterized protein At1g29160 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.