Factsheet for TraesCS3A01G189600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G193100.1	Wheat	nucleus	97.06	97.06
KRH42862	Soybean	nucleus	8.82	53.85
Os01t0277500-01	Rice	nucleus	61.97	53.25
EES00579	Sorghum	nucleus	54.83	50.98
Zm00001d040455_P001	Maize	nucleus	54.62	50.68
VIT_10s0003g01260.t01	Wine grape	nucleus	15.97	47.8
Bra030124.1-P	Field mustard	nucleus	11.97	46.72
CDY71347	Canola	nucleus	12.61	45.45
PGSC0003DMT400087458	Potato	nucleus	14.92	43.03
Solyc02g076850.1.1	Tomato	nucleus	14.5	42.33
KRH58964	Soybean	nucleus	14.5	41.82
KRH21283	Soybean	nucleus	12.61	40.82
CDY43321	Canola	nucleus	14.92	40.8
CDX90171	Canola	nucleus	14.92	40.8
AT1G29160.1	Thale cress	nucleus	14.92	40.57
CDX99791	Canola	nucleus	14.71	40.46
AT2G34140.1	Thale cress	nucleus	14.29	40.0
Bra010848.1-P	Field mustard	nucleus	14.71	40.0
Bra032292.1-P	Field mustard	nucleus	14.71	40.0
CDY50789	Canola	nucleus	14.71	40.0
KRH11011	Soybean	nucleus	12.82	39.87
CDY15647	Canola	nucleus	14.5	38.98
CDY37670	Canola	nucleus	13.66	38.69
Bra021895.1-P	Field mustard	nucleus	13.45	38.1
CDY67393	Canola	nucleus	13.45	37.65
Solyc02g067230.2.1	Tomato	nucleus	35.08	35.76
PGSC0003DMT400064695	Potato	nucleus	34.87	35.7
VIT_08s0056g01230.t01	Wine grape	nucleus	36.34	35.02
TraesCS2A01G100800.1	Wheat	nucleus	34.87	34.66
TraesCS3A01G180600.1	Wheat	nucleus	39.08	34.51
TraesCS3A01G271700.1	Wheat	nucleus	10.71	32.9
Solyc02g088070.2.1	Tomato	nucleus	31.72	32.68
PGSC0003DMT400003359	Potato	nucleus	32.56	31.83
TraesCS1A01G334100.1	Wheat	nucleus, plastid	13.87	31.58
KRG94921	Soybean	nucleus	31.93	31.47
KRH64974	Soybean	nucleus	30.25	31.24
TraesCS4A01G017700.1	Wheat	nucleus	27.52	29.98
KRH44749	Soybean	nucleus	26.26	28.8
TraesCS3A01G306800.1	Wheat	nucleus	12.18	28.71
KRH13096	Soybean	nucleus, vacuole	27.31	27.9
TraesCS2A01G590700.1	Wheat	nucleus	10.71	25.37
TraesCS2A01G590800.1	Wheat	plastid	11.34	24.66
TraesCS2A01G591200.1	Wheat	nucleus, plastid	10.71	23.83
TraesCS2A01G591100.1	Wheat	nucleus, plastid	10.29	23.22
TraesCS3A01G106500.1	Wheat	nucleus	10.71	21.43
TraesCS2A01G591000.1	Wheat	mitochondrion, nucleus	10.71	20.48
TraesCS4A01G234000.1	Wheat	nucleus	10.71	19.17
TraesCS5A01G251800.1	Wheat	nucleus	10.71	18.15

Protein Annotations

EnsemblPlants:TraesCS3A01G189600.1	EnsemblPlantsGene:TraesCS3A01G189600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31089	PANTHER:PTHR31089:SF13	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr3A:+:234210473..234214629

Molecular Weight (calculated)

51911.6 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.544

Length

476 amino acids

Sequence
(BLAST)

001: MAALRDRGDA AIKLFGRTIP LLDAAAEVVT KLGNDANSND VMPCVSNKLL NVEATPFCSK NREQNDQAIS KHGVEVRTGF KSEEIKTGSD GSGQDKVLKK
101: PDIIVPCPRC NSMETKFCYF NNYNVSQPRH FCRNCQRYWT AGGNIRNVPV GSGRRRNKHA SHFRHAMMSC DANIAAPGDV SNEIHHLALP LLPQVLPGPI
201: KENKTVKEFG SQVPVCKPMS SIHNIEEQKD TYLVALASGD NSEEQSCPSP ATVSGCSENQ TPDSAVKKEP SNVLGYYNGI TLPHPHGPAL VFPWSPGWNS
301: IAVMAAAQCS TEPIQGLENV KHGLPPWAPP LMMAAPGICT PVVPFPMMPP PLWSCIPGWP NGMWSSPCPG NNGPPNKITC SEDNSPTLGK HSRESDLQEE
401: NRENNVQVPK TLRIDDPSEA TKSSVRDTLG IKPDEKGLFE PLQMKVLKND KTPESPQALQ ANPAAFLRSQ SFQERT

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.