Factsheet for PGSC0003DMT400087458

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g076850.1.1	Tomato	nucleus	94.55	95.71
KRH42862	Soybean	nucleus	29.09	61.54
VIT_10s0003g01260.t01	Wine grape	nucleus	56.36	58.49
Bra030124.1-P	Field mustard	nucleus	42.42	57.38
CDY71347	Canola	nucleus	43.64	54.55
CDX99791	Canola	nucleus	52.12	49.71
KRH58964	Soybean	nucleus	49.7	49.7
KRH11011	Soybean	nucleus	46.06	49.67
KRH21283	Soybean	nucleus	44.24	49.66
AT1G29160.1	Thale cress	nucleus	52.12	49.14
Bra032292.1-P	Field mustard	nucleus	52.12	49.14
CDY50789	Canola	nucleus	52.12	49.14
AT2G34140.1	Thale cress	nucleus	50.3	48.82
CDY43321	Canola	nucleus	50.91	48.28
CDX90171	Canola	nucleus	50.91	48.28
Bra010848.1-P	Field mustard	nucleus	50.3	47.43
CDY15647	Canola	nucleus	50.3	46.89
CDY37670	Canola	nucleus	46.06	45.24
CDY67393	Canola	nucleus	46.06	44.71
Bra021895.1-P	Field mustard	nucleus	45.45	44.64
PGSC0003DMT400006421	Potato	nucleus	29.09	23.08
PGSC0003DMT400034111	Potato	nucleus	25.45	21.65
PGSC0003DMT400030496	Potato	nucleus	25.45	21.43
PGSC0003DMT400026137	Potato	nucleus	27.88	19.17
PGSC0003DMT400047370	Potato	nucleus	44.24	16.52
PGSC0003DMT400064695	Potato	nucleus	46.06	16.34
PGSC0003DMT400003359	Potato	nucleus	46.67	15.81
TraesCS3D01G193100.1	Wheat	nucleus	44.24	15.34
TraesCS3A01G189600.1	Wheat	nucleus	43.03	14.92
PGSC0003DMT400083080	Potato	nucleus	43.64	14.63
PGSC0003DMT400050273	Potato	nucleus	44.24	14.51
Os01t0277500-01	Rice	nucleus	45.45	13.54
Zm00001d040455_P001	Maize	nucleus	41.82	13.45
EES00579	Sorghum	nucleus	41.21	13.28

Protein Annotations

EntrezGene:102592414	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1DDW0
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400037029	PGSC:PGSC0003DMG400037029	EnsemblPlants:PGSC0003DMT400087458	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF14	UniParc:UPI000295E768	RefSeq:XP_006362415.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400037029]

Coordinates

chr2:+:32204660..32205157

Molecular Weight (calculated)

18469.6 Da

IEP (calculated)

8.286

GRAVY (calculated)

-0.876

Length

165 amino acids

Sequence
(BLAST)

001: MAQVQESPIS QGIKLFGATI QIQEKQAKTT HQPTNKVVDD DDNDNDQEKR PDKIIPCPRC KSMETKFCYF NNYNVNQPRH FCKGCQRYWT AGGALRNVPV
101: GAGRRKAKPP CGPGPHGDLA GLSDGCNFFD VANQLDFDGV VAHEDQWHLF PAAKRRRSTS DSQSY

Best Arabidopsis Sequence Match ( AT1G29160.1 )
(BLAST)

001: MATQDSQGIK LFGKTITFNA NITQTIKKEE QQQQQQPELQ ATTAVRSPSS DLTAEKRPDK IIPCPRCKSM ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG
101: ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA TASHGGFRHD FPVKRLRCYT DGQSC

Arabidopsis Description

DOF1.5Uncharacterized protein At1g29160 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.