Factsheet for PGSC0003DMT400003359

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088070.2.1	Tomato	nucleus	85.22	89.83
PGSC0003DMT400064695	Potato	nucleus	52.36	54.84
PGSC0003DMT400087458	Potato	nucleus	15.81	46.67
PGSC0003DMT400047370	Potato	nucleus	39.84	43.89
PGSC0003DMT400050273	Potato	nucleus	41.07	39.76
PGSC0003DMT400083080	Potato	nucleus	35.73	35.37
VIT_08s0056g01230.t01	Wine grape	nucleus	33.47	33.0
KRH64974	Soybean	nucleus	31.01	32.75
TraesCS3A01G189600.1	Wheat	nucleus	31.83	32.56
KRG94921	Soybean	nucleus	32.03	32.3
TraesCS3D01G193100.1	Wheat	nucleus	31.42	32.14
PGSC0003DMT400034111	Potato	nucleus	12.73	31.96
KRH44749	Soybean	nucleus	28.34	31.8
PGSC0003DMT400006421	Potato	nucleus	13.35	31.25
Os01t0277500-01	Rice	nucleus	35.11	30.87
KRH13096	Soybean	nucleus, vacuole	28.75	30.04
PGSC0003DMT400030496	Potato	nucleus	11.7	29.08
Zm00001d040455_P001	Maize	nucleus	30.39	28.85
PGSC0003DMT400026137	Potato	nucleus	13.76	27.92
EES00579	Sorghum	nucleus	29.16	27.73

Protein Annotations

EntrezGene:102582118	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M0ZLI3
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400001330	PGSC:PGSC0003DMG400001330	EnsemblPlants:PGSC0003DMT400003359	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI000295CB26	InterPro:Znf_Dof	SEG:seg

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001330]

Coordinates

chr2:-:46144306..46147290

Molecular Weight (calculated)

54049.7 Da

IEP (calculated)

5.743

GRAVY (calculated)

-0.734

Length

487 amino acids

Sequence
(BLAST)

001: MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DTGDNSFSAG EVEQELKRQC DDCIDGNEHL TTEDLQDQNP IQQRCDIIKE SPDYYESSTA KTSKSEEEHS
101: ETSNSQERNL KKPDKTLPCP RCNSMETKFC YFNNYNASQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKHK NSVLHYSHIS VSEALSNART NFSNETHQPP
201: LKFNGTILTF DTENPLSESM VSVLNVADKT MQNCSGNGFQ KYKELRIQAG DNGDDHSDGS SVTAVSSKDN DNGLPDTPRK NYNSFPTHLP CFTEAPWPYI
301: WSSVHCRNAV PPPGYSLPGI PMPFFPATTY WGCTIPGSWN VPWMFPPTAS HNQMPLTPAP DSPTSGKHSR DENVLKSEGT EEEQRKESDP GRRLWFPKTL
401: RIDDPGEAAK SPIWAILGIK HEVVDSVGGG LLNAFLPKND ERSCVSENST LLQVNPAAMS RSYSADYASQ LSATGISVRP VIHTVVQ

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.