Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g065290.1.1 | Tomato | nucleus | 93.3 | 89.16 |
| PGSC0003DMT400026137 | Potato | nucleus | 61.86 | 50.0 |
| PGSC0003DMT400006421 | Potato | nucleus | 38.14 | 35.58 |
| PGSC0003DMT400030496 | Potato | nucleus | 32.47 | 32.14 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 34.02 | 28.7 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 32.99 | 27.83 |
| KXG31638 | Sorghum | nucleus | 32.99 | 27.23 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 32.47 | 26.47 |
| Zm00001d039482_P001 | Maize | nucleus | 30.93 | 25.97 |
| PGSC0003DMT400087458 | Potato | nucleus | 21.65 | 25.45 |
| PGSC0003DMT400050273 | Potato | nucleus | 35.05 | 13.52 |
| PGSC0003DMT400047370 | Potato | nucleus | 29.9 | 13.12 |
| PGSC0003DMT400064695 | Potato | nucleus | 31.44 | 13.12 |
| PGSC0003DMT400083080 | Potato | nucleus | 32.47 | 12.8 |
| PGSC0003DMT400003359 | Potato | nucleus | 31.96 | 12.73 |
Protein Annotations
| EntrezGene:102582971 | MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:M1B057 |
| PFAM:PD007478 | PFAM:PF02701 | EnsemblPlantsGene:PGSC0003DMG400013105 | PGSC:PGSC0003DMG400013105 | EnsemblPlants:PGSC0003DMT400034111 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF12 | UniParc:UPI000296372F | RefSeq:XP_006367424.1 | InterPro:Znf_Dof |
Description
DOF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013105]
Coordinates
chr2:-:24148416..24149311
Molecular Weight (calculated)
21188.9 Da
IEP (calculated)
9.193
GRAVY (calculated)
-0.526
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLEASEKRV TKQQTGGVQA PPTQEPDHQL PCPRCDSINT KFCYYNNYNL SQPRHFCKSC RRYWTQGGTL RDIPIGGGSR KNAKRSRIYT NTPFSTIASV
101: SPHVVPGNSP FVLPLPAANQ LLFGTDVKPI NNFTSLLSSH GPGVLALGGI EDMGFDIGRS AVWPFPGAPD PYGRNYNNGS GAGMWQFSGG DYFN
101: SPHVVPGNSP FVLPLPAANQ LLFGTDVKPI NNFTSLLSSH GPGVLALGGI EDMGFDIGRS AVWPFPGAPD PYGRNYNNGS GAGMWQFSGG DYFN
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Arabidopsis Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.