Factsheet for PGSC0003DMT400006421

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121400.1.1	Tomato	nucleus	95.19	94.29
KRH47156	Soybean	nucleus	56.25	55.45
VIT_09s0002g02490.t01	Wine grape	nucleus	57.21	55.09
KRH09992	Soybean	nucleus	54.81	54.03
KRH44186	Soybean	nucleus	55.29	53.99
KRH23341	Soybean	nucleus	52.88	51.89
GSMUA_Achr7P09590_001	Banana	nucleus	46.15	48.98
GSMUA_Achr10P...	Banana	nucleus	47.6	43.42
GSMUA_Achr2P15700_001	Banana	nucleus	45.67	42.41
GSMUA_Achr4P30860_001	Banana	nucleus	44.71	39.74
PGSC0003DMT400034111	Potato	nucleus	35.58	38.14
PGSC0003DMT400026137	Potato	nucleus	39.42	34.17
PGSC0003DMT400087458	Potato	nucleus	23.08	29.09
PGSC0003DMT400030496	Potato	nucleus	25.96	27.55
CDX69349	Canola	nucleus, plastid	30.29	26.03
CDX75689	Canola	nucleus, plastid	29.81	25.62
Bra011800.1-P	Field mustard	nucleus, plastid	29.81	25.62
AT4G38000.1	Thale cress	nucleus, plastid	29.33	24.8
PGSC0003DMT400064695	Potato	nucleus	31.25	13.98
PGSC0003DMT400083080	Potato	nucleus	31.73	13.41
PGSC0003DMT400003359	Potato	nucleus	31.25	13.35
PGSC0003DMT400047370	Potato	nucleus	27.88	13.12
PGSC0003DMT400050273	Potato	nucleus	31.25	12.92

Protein Annotations

EntrezGene:102595502	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M0ZRB2
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400002507	PGSC:PGSC0003DMG400002507	EnsemblPlants:PGSC0003DMT400006421	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF23	UniParc:UPI000294DDB9	RefSeq:XP_006343007.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002507]

Coordinates

chr3:-:60666505..60668866

Molecular Weight (calculated)

22453.8 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.845

Length

208 amino acids

Sequence
(BLAST)

001: MQDPSIYSQI KPQFPEQEHL KCPRCDSPNT KFCYYNNYNL SQPRHYCKSC RRYWTKGGTL RNIPVGGGSR KSTKRSSSSS KKSSSTTTSS PATPPLTSPS
101: SSTNPKPEPF CIPAIPSFDV MTTGPFSSLL ASTEPQFGNF LEALNPNNNG STLQLGNPIP SSGSGSNHQN GNTSYLGVQN GGESNNCWNG GNNGWPDLAI
201: FTPGSNFQ

Best Arabidopsis Sequence Match ( AT1G51700.1 )
(BLAST)

001: MQDLTSAAAY YHQSMMMTTA KQNQPELPEQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC KNCRRYWTKG GALRNIPVGG GTRKSNKRSG SSPSSNLKNQ
101: TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN

Arabidopsis Description

DOF1.7Dof zinc finger protein DOF1.7 [Source:UniProtKB/Swiss-Prot;Acc:O82155]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.