Factsheet for PGSC0003DMT400050273

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002842
PGSC0003DMT400048370
PGSC0003DMT400051416
PGSC0003DMT400062327

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	PGSC0003DMT400051416	AT1G68050.1	16002617
AT5G62430.1	PGSC0003DMT400002842	AT1G22770.1	17872410
AT5G62430.1	PGSC0003DMT400048370	AT1G22770.1	17872410
AT5G62430.1	PGSC0003DMT400051416	AT1G68050.1	16002617
AT5G62430.1	PGSC0003DMT400062327	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115940.2.1	Tomato	nucleus	94.23	94.61
PGSC0003DMT400083080	Potato	nucleus	55.07	56.3
VIT_17s0000g06310.t01	Wine grape	nucleus	50.89	54.12
CDY69084	Canola	nucleus	28.63	52.55
KRH03487	Soybean	nucleus	48.91	52.23
CDY00286	Canola	nucleus	28.23	52.01
AT5G62430.1	Thale cress	nucleus	30.82	52.01
VIT_01s0026g02580.t01	Wine grape	nucleus	49.11	51.78
KRH56903	Soybean	nucleus	48.31	51.37
KRH54567	Soybean	nucleus	46.52	51.09
CDY67518	Canola	nucleus	29.42	50.68
CDY69244	Canola	nucleus	29.42	50.68
KRH63324	Soybean	nucleus	47.12	50.43
Bra029261.1-P	Field mustard	nucleus	28.83	49.66
Bra010082.1-P	Field mustard	nucleus	26.44	49.63
PGSC0003DMT400064695	Potato	nucleus	42.94	46.45
CDY47405	Canola	nucleus	39.36	46.15
Bra018141.1-P	Field mustard	nucleus	38.97	45.9
CDY66672	Canola	nucleus	38.97	45.9
PGSC0003DMT400047370	Potato	nucleus	39.96	45.48
AT3G47500.1	Thale cress	nucleus	39.96	44.87
PGSC0003DMT400087458	Potato	nucleus	14.51	44.24
PGSC0003DMT400003359	Potato	nucleus	39.76	41.07
EER95426	Sorghum	nucleus	32.6	38.68
Os03t0169600-01	Rice	nucleus	33.2	37.95
TraesCS4A01G017700.1	Wheat	nucleus	32.6	37.53
TraesCS4B01G286400.1	Wheat	nucleus	32.21	37.41
TraesCS4D01G285100.1	Wheat	nucleus	32.8	37.33
HORVU4Hr1G074990.1	Barley	nucleus	32.41	36.88
TraesCS2A01G100800.1	Wheat	nucleus	34.99	36.74
Zm00001d027846_P001	Maize	nucleus	31.41	36.57
Os07t0685000-02	Rice	nucleus	34.59	36.55
TraesCS2B01G118000.1	Wheat	nucleus	34.59	36.33
HORVU2Hr1G017290.1	Barley	nucleus	34.0	36.0
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	34.99	35.13
OQU90492	Sorghum	nucleus	33.8	35.12
PGSC0003DMT400034111	Potato	nucleus	13.52	35.05
Zm00001d022525_P001	Maize	nucleus	34.0	33.2
PGSC0003DMT400006421	Potato	nucleus	12.92	31.25
PGSC0003DMT400026137	Potato	nucleus	13.52	28.33
PGSC0003DMT400030496	Potato	nucleus	10.54	27.04

Protein Annotations

EntrezGene:102597615	MapMan:15.5.1.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851
UniProt:M1BQ21	PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400019528	PGSC:PGSC0003DMG400019528	EnsemblPlants:PGSC0003DMT400050273
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI000294A4C7	RefSeq:XP_006364590.1
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

Dof zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019528]

Coordinates

chr3:-:55782564..55785296

Molecular Weight (calculated)

54941.0 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.821

Length

503 amino acids

Sequence
(BLAST)

001: MRQVKEPEIK LFGKKIFLPE NGKILPVIVT GEDSDVGKSV SASEVVTADE SSTGSDRDPC LVDKEGNNSQ QDESDDGSEY EKEETDKDRM TRELSEAKLE
101: EKDQNLMMEE SDNLKSPSEN KTKTHTVDDD SPRVKSSKTE DDQNDASNTQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS CQRYWTAGGT
201: MRNVPVGAGR RKNKNSASHC RHIMISEALE AARIDPPTGF HHPAFKPNGT VLSFGPDLPL CDSMASVLNL AENNTPNGIR NGFYRREHKN PSGIGGENGD
301: DCSSGSSVTT SNSMAEGVKN RPPEAVMHTI NAFPSPVPCL PGVPWPIPYA AVPFPAITPA GYPVPFCPPP YWNCNVPGPW SLPWLTPPSP TANQKGSSSA
401: PNSPLGKHSR DGELLKPNNP EGQKNSEGSV LIPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSSEKDHPA TTSPALQANP AAFSRSLSFQ
501: ERV

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.