Factsheet for PGSC0003DMT400047370

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400039493
PGSC0003DMT400051416
PGSC0003DMT400069346

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39660.1	PGSC0003DMT400051416	AT1G68050.1	16002617
AT5G39660.1	PGSC0003DMT400039493	AT5G50680.1	21798944
AT5G39660.1	PGSC0003DMT400069346	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007880.2.1	Tomato	nucleus	94.12	94.33
KRH01188	Soybean	nucleus	51.81	45.71
KRH40083	Soybean	nucleus	50.91	44.73
PGSC0003DMT400087458	Potato	nucleus	16.52	44.24
PGSC0003DMT400064695	Potato	nucleus	45.93	43.66
PGSC0003DMT400050273	Potato	nucleus	45.48	39.96
PGSC0003DMT400003359	Potato	nucleus	43.89	39.84
Bra028437.1-P	Field mustard	nucleus	34.62	38.25
CDX74440	Canola	nucleus	35.52	37.03
CDY37010	Canola	nucleus	32.35	36.67
CDX67434	Canola	nucleus	35.07	36.64
GSMUA_Achr11P...	Banana	nucleus	38.24	36.27
CDY30261	Canola	nucleus	35.97	36.14
PGSC0003DMT400083080	Potato	nucleus	40.05	35.98
Bra025655.1-P	Field mustard	nucleus	36.2	35.96
AT5G39660.1	Thale cress	nucleus	36.2	35.01
PGSC0003DMT400034111	Potato	nucleus	13.12	29.9
PGSC0003DMT400026137	Potato	nucleus	15.38	28.33
PGSC0003DMT400006421	Potato	nucleus	13.12	27.88
PGSC0003DMT400030496	Potato	nucleus	11.54	26.02

Protein Annotations

EntrezGene:102603307	MapMan:15.5.1.5	ProteinID:AGF33077	ProteinID:AGF33077.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003851	EMBL:KC284850	UniProt:M1BKM3	PFAM:PD007478	PFAM:PF02701
EnsemblPlantsGene:PGSC0003DMG400018408	PGSC:PGSC0003DMG400018408	EnsemblPlants:PGSC0003DMT400047370	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089
PANTHER:PTHR31089:SF7	UniParc:UPI000294A250	RefSeq:XP_006355111.1	InterPro:Znf_Dof	SEG:seg	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018408]

Coordinates

chr5:+:4538880..4541736

Molecular Weight (calculated)

49203.8 Da

IEP (calculated)

6.376

GRAVY (calculated)

-0.836

Length

442 amino acids

Sequence
(BLAST)

001: MSEVRDPAIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDDKITLEGE FTQSKQDDEL VDPTADSSIE PETSSGISDD IKMQDADKET LSSKSIEEED
101: SSEEKALKKP DKLIPCPRCN SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR VEAAAHGMHL PALRTNGTVL
201: TFGSDKPLCD SMVSALNLAE NSHNMNRNEF HGSERRMPAI GNDQSNGTCS TASSVTDKES SAGTHDLANW NNFQPFPPQV PYFQGAPWPY SGFPVSFYPA
301: TPYWGCTVAN PWNVPWLSSD QSSVQNNSPT SPTLGKHSRD ESKIDPSQSR RRDANLQNRE GERCVLIPKT LRIHDPNEAA KSSIWSTLGI RNEKIDSARG
401: TMLFSAFNPK ADHRNREHDT SFALQANPAA LSRSLHFRES TQ

Best Arabidopsis Sequence Match ( AT5G62430.1 )
(BLAST)

001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM

Arabidopsis Description

CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.