Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74440 | Canola | nucleus | 93.41 | 96.93 |
| Bra025655.1-P | Field mustard | nucleus | 96.82 | 95.73 |
| AT5G39660.1 | Thale cress | nucleus | 81.36 | 78.34 |
| CDX67434 | Canola | nucleus | 74.55 | 77.54 |
| CDY37010 | Canola | nucleus | 68.41 | 77.18 |
| CDY00286 | Canola | nucleus | 30.0 | 48.35 |
| CDY67518 | Canola | nucleus | 31.59 | 47.6 |
| CDY69084 | Canola | nucleus | 29.32 | 47.08 |
| CDY69244 | Canola | nucleus | 31.14 | 46.92 |
| CDY71347 | Canola | nucleus | 13.64 | 45.45 |
| CDX99791 | Canola | nucleus | 15.91 | 40.46 |
| CDX90171 | Canola | nucleus | 15.91 | 40.23 |
| CDY50789 | Canola | nucleus | 15.91 | 40.0 |
| CDY43321 | Canola | nucleus | 15.68 | 39.66 |
| CDY15647 | Canola | nucleus | 15.45 | 38.42 |
| KRH01188 | Soybean | nucleus | 43.41 | 38.12 |
| CDY37670 | Canola | nucleus | 14.55 | 38.1 |
| KRH40083 | Soybean | nucleus | 42.95 | 37.57 |
| CDY67393 | Canola | nucleus | 14.32 | 37.06 |
| Solyc05g007880.2.1 | Tomato | nucleus | 36.36 | 36.28 |
| PGSC0003DMT400047370 | Potato | nucleus | 36.14 | 35.97 |
| CDY47405 | Canola | nucleus | 33.18 | 34.03 |
| CDX95919 | Canola | nucleus | 28.41 | 33.97 |
| CDY66672 | Canola | nucleus | 32.5 | 33.49 |
| CDY01768 | Canola | nucleus | 27.95 | 33.42 |
| GSMUA_Achr11P... | Banana | nucleus | 35.23 | 33.26 |
| CDY16193 | Canola | nucleus | 24.32 | 32.72 |
| CDY72477 | Canola | nucleus | 27.27 | 32.61 |
| CDY07344 | Canola | nucleus | 27.73 | 31.61 |
| CDY67869 | Canola | nucleus | 27.5 | 31.43 |
| CDY56923 | Canola | nucleus | 12.5 | 29.57 |
| CDY50735 | Canola | extracellular | 24.32 | 29.4 |
| CDY44994 | Canola | nucleus | 17.73 | 28.89 |
| CDY43923 | Canola | nucleus | 10.45 | 28.57 |
| CDY50734 | Canola | nucleus | 17.5 | 28.41 |
| CDY51457 | Canola | nucleus | 12.27 | 28.27 |
| CDY46443 | Canola | nucleus | 21.36 | 28.06 |
| CDY52953 | Canola | nucleus | 12.05 | 27.32 |
| CDY52832 | Canola | nucleus | 13.64 | 27.03 |
| CDY46544 | Canola | nucleus | 12.27 | 27.0 |
| CDY37299 | Canola | nucleus | 12.27 | 27.0 |
| CDX69349 | Canola | nucleus, plastid | 14.77 | 26.86 |
| CDX75689 | Canola | nucleus, plastid | 14.77 | 26.86 |
| CDY48879 | Canola | nucleus | 12.5 | 26.7 |
| CDY32420 | Canola | nucleus | 12.5 | 26.7 |
| CDY69021 | Canola | nucleus | 11.82 | 26.4 |
| CDY58082 | Canola | nucleus | 12.27 | 26.21 |
| CDY20892 | Canola | nucleus | 12.27 | 26.21 |
| CDY17783 | Canola | nucleus | 13.41 | 25.76 |
| CDX87836 | Canola | nucleus | 10.45 | 25.27 |
| CDY02086 | Canola | nucleus | 13.86 | 25.21 |
| CDY18628 | Canola | nucleus | 12.05 | 25.0 |
| CDY54696 | Canola | nucleus | 13.41 | 24.79 |
| CDY23010 | Canola | nucleus | 13.86 | 24.7 |
| CDX83127 | Canola | nucleus | 13.18 | 24.68 |
| CDX81350 | Canola | nucleus | 12.27 | 24.11 |
| CDY12790 | Canola | nucleus | 11.59 | 23.29 |
| CDY01450 | Canola | nucleus | 11.59 | 23.18 |
| CDY17009 | Canola | nucleus | 12.05 | 23.04 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078GXM9 | UniProt:A0A078GXM9 | EnsemblPlants:CDY30261 | ProteinID:CDY30261 | ProteinID:CDY30261.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00044902001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | UniParc:UPI0004EDCE74 | InterPro:Znf_Dof | SEG:seg |
Description
BnaC04g31720DBnaC04g31720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXM9]
Coordinates
chrLK032251:+:139465..141518
Molecular Weight (calculated)
47303.9 Da
IEP (calculated)
5.579
GRAVY (calculated)
-0.771
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPAIKLFG KTIPLPELLG GDLTEQQDQN PVRLSDSCTG DDEEMGDSGL AGGGGGDDGG CGDSESQKEE KDTECGDESL CNESSKVSAA SSITEKTETT
101: KVAKTDEETS QNGTCSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KNPASHFNRH VTITSAEAMQ
201: KAAAARTADN GTSLLTFGSD SVLCESMASG LNLADKSMLK KTEASAGLKI TVPLNPSKEQ AGTISPLPCF PGPPPPPPTW PYAWNGVSWT AVPFYPPPAY
301: WSYPGVSPGT WNSIAWMPQP TSPSAGSGPN SPTLGKHSRD ESIAEPGTVL EETESPLGRE KSKSERCLWV PKTLRIDDPE EAAKSSIWET LGIKKDEKAD
401: TFGAFRSPNK EKSSLSQGRR PELQANPAAL SRSANFHESS
101: KVAKTDEETS QNGTCSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KNPASHFNRH VTITSAEAMQ
201: KAAAARTADN GTSLLTFGSD SVLCESMASG LNLADKSMLK KTEASAGLKI TVPLNPSKEQ AGTISPLPCF PGPPPPPPTW PYAWNGVSWT AVPFYPPPAY
301: WSYPGVSPGT WNSIAWMPQP TSPSAGSGPN SPTLGKHSRD ESIAEPGTVL EETESPLGRE KSKSERCLWV PKTLRIDDPE EAAKSSIWET LGIKKDEKAD
401: TFGAFRSPNK EKSSLSQGRR PELQANPAAL SRSANFHESS
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
Arabidopsis Description
CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.