Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036082.1-P | Field mustard | nucleus | 89.96 | 92.79 |
| CDY52832 | Canola | nucleus | 89.96 | 92.79 |
| CDY54696 | Canola | nucleus | 81.66 | 78.57 |
| CDX83127 | Canola | nucleus | 79.91 | 77.87 |
| CDY02086 | Canola | nucleus | 80.79 | 76.45 |
| CDY23010 | Canola | nucleus | 79.91 | 74.09 |
| AT3G50410.1 | Thale cress | nucleus | 77.73 | 70.36 |
| CDY12790 | Canola | nucleus | 54.59 | 57.08 |
| CDY01450 | Canola | nucleus | 54.59 | 56.82 |
| CDY18628 | Canola | nucleus | 51.97 | 56.13 |
| CDX81350 | Canola | nucleus | 54.15 | 55.36 |
| KRH70017 | Soybean | nucleus | 50.66 | 49.57 |
| KRH08373 | Soybean | nucleus | 49.78 | 48.31 |
| CDY20892 | Canola | nucleus | 34.06 | 37.86 |
| CDY58082 | Canola | nucleus | 33.62 | 37.38 |
| CDY56923 | Canola | nucleus | 30.13 | 37.1 |
| CDY51457 | Canola | nucleus | 30.13 | 36.13 |
| CDY43923 | Canola | nucleus | 25.33 | 36.02 |
| CDX87836 | Canola | nucleus | 27.95 | 35.16 |
| CDY52953 | Canola | nucleus | 29.26 | 34.54 |
| CDY71347 | Canola | nucleus | 19.65 | 34.09 |
| CDY46544 | Canola | nucleus | 29.69 | 34.0 |
| CDY69021 | Canola | nucleus | 28.82 | 33.5 |
| CDY17009 | Canola | nucleus | 32.75 | 32.61 |
| CDY32420 | Canola | nucleus | 29.26 | 32.52 |
| CDY48879 | Canola | nucleus | 29.26 | 32.52 |
| CDY37299 | Canola | nucleus | 28.38 | 32.5 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 31.88 | 31.74 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 31.44 | 31.3 |
| Zm00001d039482_P001 | Maize | nucleus | 30.57 | 30.3 |
| KXG31638 | Sorghum | nucleus | 31.0 | 30.21 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 31.0 | 29.83 |
| CDX99791 | Canola | nucleus | 21.4 | 28.32 |
| CDY50789 | Canola | nucleus | 21.4 | 28.0 |
| CDY15647 | Canola | nucleus | 20.96 | 27.12 |
| CDY43321 | Canola | nucleus | 20.52 | 27.01 |
| CDX90171 | Canola | nucleus | 20.52 | 27.01 |
| CDY37670 | Canola | nucleus | 19.21 | 26.19 |
| CDY67393 | Canola | nucleus | 19.21 | 25.88 |
| CDX69349 | Canola | nucleus, plastid | 26.2 | 24.79 |
| CDX75689 | Canola | nucleus, plastid | 25.33 | 23.97 |
| CDY69244 | Canola | nucleus | 25.76 | 20.21 |
| CDY00286 | Canola | nucleus | 24.02 | 20.15 |
| CDY69084 | Canola | nucleus | 24.02 | 20.07 |
| CDY67518 | Canola | nucleus | 25.33 | 19.86 |
| CDY16193 | Canola | nucleus | 27.07 | 18.96 |
| CDY44994 | Canola | nucleus | 22.27 | 18.89 |
| CDY46443 | Canola | nucleus | 24.89 | 17.01 |
| CDY50734 | Canola | nucleus | 19.65 | 16.61 |
| CDY50735 | Canola | extracellular | 26.2 | 16.48 |
| CDY67869 | Canola | nucleus | 26.2 | 15.58 |
| CDY07344 | Canola | nucleus | 26.2 | 15.54 |
| CDX95919 | Canola | nucleus | 24.89 | 15.49 |
| CDY72477 | Canola | nucleus | 24.45 | 15.22 |
| CDY01768 | Canola | nucleus | 24.45 | 15.22 |
| CDY66672 | Canola | nucleus | 27.51 | 14.75 |
| CDY47405 | Canola | nucleus | 27.51 | 14.69 |
| CDX74440 | Canola | nucleus | 25.76 | 13.92 |
| CDY37010 | Canola | nucleus | 23.58 | 13.85 |
| CDX67434 | Canola | nucleus | 25.33 | 13.71 |
| CDY30261 | Canola | nucleus | 25.76 | 13.41 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078FZK4 | UniProt:A0A078FZK4 | EnsemblPlants:CDY17783 | ProteinID:CDY17783 | ProteinID:CDY17783.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00002041001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF12 | UniParc:UPI0004EB99C5 | InterPro:Znf_Dof |
Description
BnaC08g21910DBnaC08g21910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZK4]
Coordinates
chrLK032077:+:562350..563039
Molecular Weight (calculated)
24503.6 Da
IEP (calculated)
8.596
GRAVY (calculated)
-0.398
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMSDSGESR QIAMRPHGVI TGLPPTASEQ QEQLPCPRCN STNTKFCYYN NYNFSQPRHF CKSCRRYWTH GGTLRDIPVG GGTRKSAKRS RTCSGTSSVP
101: LQATPVLFPH SSTSNGVSHT VTAPLENDGK GSALSLSGNF TSLLNQNNAA HGTGSVIGIG LGSSFDDVSF GLGRAVWPFS TVGDSATTNV PGVAVPYTWQ
201: FEGLESSNAV EYFAWPDLSI TTPGRNSLK
101: LQATPVLFPH SSTSNGVSHT VTAPLENDGK GSALSLSGNF TSLLNQNNAA HGTGSVIGIG LGSSFDDVSF GLGRAVWPFS TVGDSATTNV PGVAVPYTWQ
201: FEGLESSNAV EYFAWPDLSI TTPGRNSLK
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Arabidopsis Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.